Variant report

Variant	rs12096115
Chromosome Location	chr1:94770355-94770356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11165098	0.80[ASN][1000 genomes]
rs11165104	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11165105	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11165111	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11587699	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12069420	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12084043	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12090310	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12090491	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1330855	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1687949	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111360	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1756254	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2150269	0.85[ASN][1000 genomes]
rs2774923	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28613199	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35493159	0.85[ASN][1000 genomes]
rs3814019	0.84[ASN][1000 genomes]
rs3827751	0.83[ASN][1000 genomes]
rs58466782	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59960594	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs722296	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7525008	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7528831	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7530160	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7538484	0.83[ASN][1000 genomes]
rs7540684	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7548951	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94763400-94775800	Weak transcription	Psoas Muscle	Psoas
2	chr1:94764800-94771200	Enhancers	HUVEC	blood vessel
3	chr1:94764800-94772000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:94765800-94770800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:94766000-94770600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:94766000-94772600	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:94766000-94774600	Weak transcription	Fetal Lung	lung
8	chr1:94766600-94775600	Weak transcription	Small Intestine	intestine
9	chr1:94767200-94775400	Weak transcription	Liver	Liver
10	chr1:94767400-94773400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:94768200-94771000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:94768200-94774800	Weak transcription	Spleen	Spleen
13	chr1:94768400-94770400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:94768400-94770600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:94768400-94771000	Weak transcription	Gastric	stomach
16	chr1:94768400-94774200	Weak transcription	Ovary	ovary
17	chr1:94768400-94775800	Weak transcription	Pancreas	Pancrea
18	chr1:94768600-94770800	Weak transcription	Left Ventricle	heart
19	chr1:94768600-94771800	Weak transcription	Adipose Nuclei	Adipose
20	chr1:94768600-94774200	Weak transcription	Right Atrium	heart
21	chr1:94768600-94774200	Weak transcription	Right Ventricle	heart
22	chr1:94769200-94772000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:94769200-94773400	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr1:94769400-94770400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:94769400-94770800	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr1:94769400-94771800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:94769400-94772000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:94769400-94772000	Enhancers	HMEC	breast
29	chr1:94769400-94772000	Enhancers	NHEK	skin
30	chr1:94769600-94772000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:94769800-94772200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:94769800-94772200	Enhancers	NHDF-Ad	bronchial
33	chr1:94770000-94770400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr1:94770000-94771400	Enhancers	HepG2	liver
35	chr1:94770000-94771800	Enhancers	NHLF	lung
36	chr1:94770000-94772000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:94770000-94772000	Enhancers	HSMM	muscle
38	chr1:94770000-94772000	Enhancers	Osteobl	bone
39	chr1:94770000-94774200	Weak transcription	Lung	lung
40	chr1:94770200-94772000	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links