Variant report

Variant	rs11180274
Chromosome Location	chr12:75294883-75294884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:75282404..75285246-chr12:75293318..75295641,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10506679	1.00[CEU][hapmap]
rs10748270	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180272	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180305	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180306	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180308	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180309	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180310	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180313	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180318	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11180319	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11180337	1.00[CEU][hapmap]
rs12230187	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12299691	1.00[CEU][hapmap]
rs12304499	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs1508273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1526811	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17114354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030879	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2177934	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2177935	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4567539	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58948261	0.93[EUR][1000 genomes]
rs59787875	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60204167	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60280721	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74107416	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74107497	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74108145	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74108146	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74110804	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74110806	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7975620	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524456	chr12:75162157-75405957	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899307	chr12:75221397-75479379	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv510603	chr12:75267275-75298527	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832461	chr12:75279973-75433102	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75290800-75295600	Enhancers	Primary T cells from cord blood	blood
2	chr12:75292000-75295400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr12:75293200-75295000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:75294600-75295000	Enhancers	Thymus	Thymus

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