Variant report

Variant	rs7975620
Chromosome Location	chr12:75358474-75358475
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:75358040..75360198-chr12:75422290..75423830,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10506679	1.00[CEU][hapmap]
rs10748270	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180271	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180272	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180273	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180274	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180280	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180305	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180306	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180308	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180309	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180310	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180313	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180318	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11180319	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11180337	1.00[CEU][hapmap]
rs12230187	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12299691	1.00[CEU][hapmap]
rs12304499	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs1508273	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1526811	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114354	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2030879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177934	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177935	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4567539	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58948261	0.87[EUR][1000 genomes]
rs59787875	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60204167	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60280721	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74107416	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74107497	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74108145	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74108146	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74110804	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74110806	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524456	chr12:75162157-75405957	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899307	chr12:75221397-75479379	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv832461	chr12:75279973-75433102	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv522290	chr12:75335027-75514623	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7975620	CD200	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75357800-75358600	Active TSS	Liver	Liver
2	chr12:75357800-75358600	Enhancers	Stomach Mucosa	stomach
3	chr12:75358000-75358800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:75358000-75358800	Enhancers	A549	lung

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