Variant report

Variant	rs60204167
Chromosome Location	chr12:75304977-75304978
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10748270	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180271	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180272	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180273	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180274	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180280	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180305	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180306	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180308	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180309	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180310	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180313	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180318	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11180319	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12230187	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1508273	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1526811	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17114354	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030879	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2177934	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2177935	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4567539	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58948261	0.87[EUR][1000 genomes]
rs59787875	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60280721	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74107416	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74107497	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74108145	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74108146	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74110804	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74110806	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7975620	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524456	chr12:75162157-75405957	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899307	chr12:75221397-75479379	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv832461	chr12:75279973-75433102	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75303800-75305000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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