Variant report

Variant	rs1508273
Chromosome Location	chr12:75284652-75284653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:75282404..75285246-chr12:75293318..75295641,2	MCF-7	breast:
2	chr12:75274838..75280839-chr12:75281596..75285487,6	MCF-7	breast:
3	chr12:75265811..75268299-chr12:75283552..75285832,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10506679	1.00[CEU][hapmap]
rs10748270	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11180271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11180272	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11180273	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11180274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11180280	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11180305	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11180306	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11180308	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11180309	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11180310	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11180313	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11180318	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11180319	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11180337	1.00[CEU][hapmap]
rs12230187	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12299691	1.00[CEU][hapmap]
rs12304499	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs1526811	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17114354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2030879	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2177934	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2177935	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4567539	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58948261	0.93[EUR][1000 genomes]
rs59787875	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60204167	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60280721	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74107416	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74107497	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74108145	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74108146	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74110804	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74110806	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7975620	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524456	chr12:75162157-75405957	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899303	chr12:75174462-75291946	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv899306	chr12:75186603-75291946	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv899307	chr12:75221397-75479379	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv510603	chr12:75267275-75298527	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv832461	chr12:75279973-75433102	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75282800-75285200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:75283000-75285200	Enhancers	HMEC	breast
3	chr12:75283000-75285400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:75283000-75287000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:75283200-75287400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr12:75283600-75284800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:75283800-75284800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr12:75284000-75285000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:75284000-75285000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:75284000-75285000	Enhancers	HSMM	muscle
11	chr12:75284000-75285000	Weak transcription	HSMMtube	muscle
12	chr12:75284000-75285400	Enhancers	HUVEC	blood vessel
13	chr12:75284000-75285400	Enhancers	NHEK	skin
14	chr12:75284000-75286200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr12:75284000-75290800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:75284200-75284800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr12:75284200-75285200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr12:75284200-75286800	Enhancers	Primary T cells from cord blood	blood
19	chr12:75284200-75292600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr12:75284400-75285000	Flanking Active TSS	A549	lung
21	chr12:75284400-75285400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:75284400-75285400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr12:75284400-75285400	Enhancers	NH-A	brain
24	chr12:75284400-75285600	Enhancers	Hela-S3	cervix
25	chr12:75284400-75294400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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