Variant report

Variant	rs11180308
Chromosome Location	chr12:75357257-75357258
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10506679	1.00[CEU][hapmap]
rs10748270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180271	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180272	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180273	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180274	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180280	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180305	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180306	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180309	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180310	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180318	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11180319	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11180337	1.00[CEU][hapmap]
rs12230187	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12299691	1.00[CEU][hapmap]
rs12304499	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs1508273	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1526811	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114354	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2030879	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177934	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177935	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4567539	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58948261	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59787875	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60204167	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60280721	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74107416	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74107497	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74108145	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74108146	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74110804	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74110806	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975620	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524456	chr12:75162157-75405957	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899307	chr12:75221397-75479379	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv832461	chr12:75279973-75433102	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv522290	chr12:75335027-75514623	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75357000-75357600	Weak transcription	Fetal Intestine Large	intestine
2	chr12:75357000-75357600	Enhancers	A549	lung
3	chr12:75357200-75357800	Weak transcription	Liver	Liver
4	chr12:75357200-75357800	Weak transcription	Stomach Mucosa	stomach
5	chr12:75357200-75358000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr12:75357200-75358400	Enhancers	Fetal Intestine Small	intestine

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