Variant report

Variant	rs58948261
Chromosome Location	chr12:75393565-75393566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10083058	0.89[ASN][1000 genomes]
rs10083091	0.89[ASN][1000 genomes]
rs10748270	0.93[EUR][1000 genomes]
rs11180271	0.93[EUR][1000 genomes]
rs11180272	0.93[EUR][1000 genomes]
rs11180273	0.93[EUR][1000 genomes]
rs11180274	0.93[EUR][1000 genomes]
rs11180280	0.93[EUR][1000 genomes]
rs11180305	0.93[EUR][1000 genomes]
rs11180306	0.93[EUR][1000 genomes]
rs11180308	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11180309	0.93[EUR][1000 genomes]
rs11180310	0.93[EUR][1000 genomes]
rs11180313	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11180318	0.93[EUR][1000 genomes]
rs11180319	0.93[EUR][1000 genomes]
rs11180337	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12230187	0.93[EUR][1000 genomes]
rs1508273	0.93[EUR][1000 genomes]
rs1526810	0.89[ASN][1000 genomes]
rs1526811	0.93[EUR][1000 genomes]
rs17114354	0.93[EUR][1000 genomes]
rs17114452	1.00[ASN][1000 genomes]
rs2030879	0.87[EUR][1000 genomes]
rs2177935	0.87[EUR][1000 genomes]
rs4567539	0.82[EUR][1000 genomes]
rs59787875	0.93[EUR][1000 genomes]
rs60204167	0.87[EUR][1000 genomes]
rs60280721	0.93[EUR][1000 genomes]
rs74107416	0.93[EUR][1000 genomes]
rs74107497	0.93[EUR][1000 genomes]
rs74108145	0.93[EUR][1000 genomes]
rs74108146	0.93[EUR][1000 genomes]
rs74110804	0.93[EUR][1000 genomes]
rs74110806	0.93[EUR][1000 genomes]
rs7975620	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524456	chr12:75162157-75405957	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899307	chr12:75221397-75479379	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv832461	chr12:75279973-75433102	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv522290	chr12:75335027-75514623	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv899308	chr12:75385097-75479379	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75393000-75393600	Active TSS	Liver	Liver
2	chr12:75393200-75393600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
3	chr12:75393200-75394200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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