Variant report

Variant	rs11208009
Chromosome Location	chr1:63195692-63195693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10159255	0.86[CHD][hapmap]
rs10789119	0.86[CHD][hapmap]
rs10789123	0.93[ASN][1000 genomes]
rs10889353	0.86[CHD][hapmap]
rs11207995	0.86[CHD][hapmap]
rs11208004	0.86[CHD][hapmap]
rs1168086	0.81[YRI][hapmap]
rs1168107	0.93[ASN][1000 genomes]
rs1168113	0.88[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1168114	0.87[ASW][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap]
rs1168132	0.83[YRI][hapmap]
rs12116574	0.86[CHD][hapmap]
rs12121288	0.93[ASN][1000 genomes]
rs12136083	0.86[CHD][hapmap]
rs1570694	0.86[CHD][hapmap]
rs1748197	0.80[CHB][hapmap]
rs1748199	0.80[CHB][hapmap];0.86[CHD][hapmap]
rs3850634	0.86[CHD][hapmap]
rs4409689	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4587594	0.86[CHD][hapmap]
rs4630152	0.93[ASN][1000 genomes]
rs4915624	0.85[ASN][1000 genomes]
rs4915853	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6661669	0.80[EUR][1000 genomes]
rs6664692	0.93[ASN][1000 genomes]
rs6666816	0.93[ASN][1000 genomes]
rs6679002	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6682423	0.81[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[YRI][hapmap];0.93[ASN][1000 genomes]
rs6686331	0.93[ASN][1000 genomes]
rs72915166	0.93[ASN][1000 genomes]
rs7517372	0.83[ASN][1000 genomes]
rs880694	0.81[ASW][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.87[YRI][hapmap];0.93[ASN][1000 genomes]
rs9787151	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9787156	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs995000	0.86[CHD][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11208009	DOCK7	Cis_1M	lymphoblastoid	RTeQTL
rs11208009	DOCK7	cis	multi-tissue	Pritchard

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63187400-63198000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:63190200-63195800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:63191800-63198000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:63191800-63199400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:63192000-63197800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:63192000-63201200	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:63192200-63198000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:63193600-63198000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:63193800-63197000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:63193800-63197800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:63193800-63198000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:63193800-63201400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:63194000-63197600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:63194000-63197800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:63194200-63197600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:63194200-63197800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:63194200-63199400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:63194600-63196000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:63194600-63202000	Enhancers	HepG2	liver
20	chr1:63194800-63195800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr1:63195000-63195800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:63195200-63198000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:63195200-63198000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:63195200-63201200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:63195400-63196600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr1:63195400-63197800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr1:63195600-63199600	Weak transcription	Stomach Mucosa	stomach

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