Variant report

Variant	rs1168132
Chromosome Location	chr1:63133468-63133469
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:63126981..63129509-chr1:63133122..63135258,2	K562	blood:
2	chr1:63133186..63134918-chr1:63152800..63155095,2	MCF-7	breast:
3	chr1:63131110..63133627-chr1:63151637..63154413,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116641	Chromatin interaction
ENSG00000235545	Chromatin interaction

Extended variants
information (count: 203 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:202)

rs_ID	r²[population]
rs1002687	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes]
rs1007205	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap]
rs10157265	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10158897	0.82[EUR][1000 genomes]
rs10159255	0.90[EUR][1000 genomes]
rs10493322	0.82[EUR][1000 genomes]
rs10789112	0.82[EUR][1000 genomes]
rs10789113	0.82[EUR][1000 genomes]
rs10789117	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10789118	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10789119	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10789120	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10889332	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs10889333	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs10889334	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs10889337	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10889338	0.82[EUR][1000 genomes]
rs10889339	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10889340	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10889343	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889344	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889347	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889348	0.90[EUR][1000 genomes]
rs10889349	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889350	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889352	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10889353	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10889354	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10889356	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10889357	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10889360	0.83[EUR][1000 genomes]
rs11207969	0.82[EUR][1000 genomes]
rs11207970	0.82[EUR][1000 genomes]
rs11207974	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs11207976	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11207977	0.82[EUR][1000 genomes]
rs11207979	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11207980	0.82[EUR][1000 genomes]
rs11207981	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11207982	0.82[EUR][1000 genomes]
rs11207983	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11207984	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11207985	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11207986	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11207990	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11207992	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs11207994	0.81[EUR][1000 genomes]
rs11207995	0.81[CEU][hapmap];0.92[EUR][1000 genomes]
rs11207996	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11207997	0.92[CHB][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11207999	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11208000	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11208001	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208004	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs11208007	0.83[EUR][1000 genomes]
rs11485618	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11577840	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1167996	0.82[EUR][1000 genomes]
rs1168009	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs1168010	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs1168013	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168015	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168017	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168018	0.88[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168020	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168021	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168022	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168023	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168026	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes]
rs1168027	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1168028	0.82[AMR][1000 genomes]
rs1168029	0.82[AMR][1000 genomes]
rs1168030	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes]
rs1168031	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes]
rs1168032	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs1168034	0.81[AMR][1000 genomes]
rs1168036	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1168040	0.82[CEU][hapmap];0.92[CHB][hapmap];0.94[YRI][hapmap]
rs1168042	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1168044	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168045	0.88[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168046	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168047	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168050	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168085	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1168086	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1168089	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168093	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1168097	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1168098	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168099	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1168102	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168103	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168107	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1168113	0.82[CEU][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes]
rs1168114	0.82[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1168124	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168128	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1179765	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1183260	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes]
rs1184547	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1184865	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs12023489	0.81[EUR][1000 genomes]
rs12025800	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12029068	0.81[EUR][1000 genomes]
rs12037659	0.81[EUR][1000 genomes]
rs12038768	0.90[EUR][1000 genomes]
rs12042319	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12047226	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12062275	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12074528	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12090886	0.87[CEU][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12116574	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs12136083	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12239736	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12239737	0.88[EUR][1000 genomes]
rs12403207	1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1305521	0.82[EUR][1000 genomes]
rs1472257	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1570694	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1627591	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1629122	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1690755	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1690761	0.82[EUR][1000 genomes]
rs1690766	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1748195	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1748197	0.89[CEU][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1748199	0.88[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1748200	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1748201	0.88[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1781195	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1781212	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1781221	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap]
rs1979722	0.81[EUR][1000 genomes]
rs2029763	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs2131925	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2131926	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2366636	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2366638	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2479464	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28399032	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34152715	0.90[EUR][1000 genomes]
rs3850634	0.81[CEU][hapmap];0.92[EUR][1000 genomes]
rs3913007	0.82[EUR][1000 genomes]
rs4329540	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4344355	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4409689	0.86[AMR][1000 genomes]
rs4459145	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4495740	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4587594	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4915838	0.82[AMR][1000 genomes]
rs4915840	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs583609	0.82[EUR][1000 genomes]
rs597076	0.82[EUR][1000 genomes]
rs597078	0.82[EUR][1000 genomes]
rs597470	0.82[EUR][1000 genomes]
rs598253	0.82[EUR][1000 genomes]
rs61471917	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs624660	0.82[EUR][1000 genomes]
rs626787	0.81[EUR][1000 genomes]
rs630144	0.81[EUR][1000 genomes]
rs631106	0.81[EUR][1000 genomes]
rs634341	0.82[EUR][1000 genomes]
rs636497	0.82[EUR][1000 genomes]
rs636523	0.82[EUR][1000 genomes]
rs637723	0.82[EUR][1000 genomes]
rs638305	0.82[EUR][1000 genomes]
rs641540	0.82[EUR][1000 genomes]
rs642845	0.82[EUR][1000 genomes]
rs656297	0.82[EUR][1000 genomes]
rs6587976	0.82[EUR][1000 genomes]
rs6587980	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs659656	0.82[EUR][1000 genomes]
rs6657050	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6666816	0.86[AMR][1000 genomes]
rs6675401	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6678483	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6682423	0.82[CEU][hapmap];0.86[AMR][1000 genomes]
rs6686331	0.86[AMR][1000 genomes]
rs6690733	0.88[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6693353	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6696502	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs746735	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7518497	0.83[EUR][1000 genomes]
rs7519785	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7520810	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7527004	0.82[AMR][1000 genomes]
rs7531579	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7534572	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7539035	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7548877	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7555577	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs783291	0.82[EUR][1000 genomes]
rs880694	0.82[CEU][hapmap];0.86[AMR][1000 genomes]
rs9436223	0.81[EUR][1000 genomes]
rs9436661	0.81[EUR][1000 genomes]
rs9787151	0.86[AMR][1000 genomes]
rs9787156	0.86[AMR][1000 genomes]
rs993013	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs995000	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs998403	0.82[EUR][1000 genomes]
rs9988450	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014376	chr1:62976472-63181359	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1168132	DOCK7	Cis_1M	lymphoblastoid	RTeQTL
rs1168132	DOCK7	cis	uninvolved skin	skin_eQTL
rs1168132	DOCK7	cis	lesional skin	skin_eQTL

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63088000-63134600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:63099600-63137000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:63107400-63151200	Weak transcription	Pancreas	Pancrea
4	chr1:63107600-63147800	Weak transcription	NHEK	skin
5	chr1:63108800-63151200	Weak transcription	Fetal Stomach	stomach
6	chr1:63109000-63147800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:63109200-63143000	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:63109200-63150200	Weak transcription	Fetal Brain Male	brain
9	chr1:63110200-63140800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:63111400-63150200	Weak transcription	Fetal Lung	lung
11	chr1:63112400-63137600	Weak transcription	Fetal Intestine Large	intestine
12	chr1:63112400-63140800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:63112400-63142400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:63112400-63142800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:63112400-63152400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:63113200-63134600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr1:63113400-63142400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:63113400-63142400	Weak transcription	Osteobl	bone
19	chr1:63113600-63151000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr1:63113600-63152800	Weak transcription	Primary B cells from cord blood	blood
21	chr1:63114000-63143000	Weak transcription	Aorta	Aorta
22	chr1:63118000-63150800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:63118200-63147600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:63119000-63148000	Weak transcription	Fetal Brain Female	brain
25	chr1:63119800-63134600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr1:63119800-63134800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:63119800-63138800	Weak transcription	Fetal Kidney	kidney
28	chr1:63119800-63142400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr1:63119800-63142400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:63119800-63150200	Weak transcription	Adipose Nuclei	Adipose
31	chr1:63120400-63136600	Weak transcription	Dnd41	blood
32	chr1:63123000-63134800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr1:63123000-63140800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:63123000-63141200	Weak transcription	Lung	lung
35	chr1:63123000-63147800	Weak transcription	Gastric	stomach
36	chr1:63126800-63147800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:63127000-63138800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:63127000-63142200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:63127400-63142400	Weak transcription	HSMM	muscle
40	chr1:63127800-63142400	Weak transcription	NH-A	brain
41	chr1:63128600-63137000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr1:63128600-63142600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:63128800-63139000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:63128800-63147400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr1:63128800-63150800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr1:63129000-63134400	Weak transcription	NHDF-Ad	bronchial
47	chr1:63131200-63149200	Weak transcription	Fetal Intestine Small	intestine
48	chr1:63132600-63134800	Weak transcription	Stomach Mucosa	stomach
49	chr1:63132800-63134800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr1:63132800-63137000	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links