The 2.0 version of rSNPBase

Variant report

Variant rs10889354
Chromosome Location chr1:63129082-63129083
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:63082800-63132600 Weak transcription H1 Cell Line embryonic stem cell
2 chr1:63088000-63134600 Weak transcription H9 Cell Line embryonic stem cell
3 chr1:63096800-63129400 Weak transcription Esophagus oesophagus
4 chr1:63099600-63137000 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr1:63107400-63129600 Weak transcription NHLF lung
6 chr1:63107400-63132200 Weak transcription Brain Germinal Matrix brain
7 chr1:63107400-63151200 Weak transcription Pancreas Pancrea
8 chr1:63107600-63147800 Weak transcription NHEK skin
9 chr1:63108800-63151200 Weak transcription Fetal Stomach stomach
10 chr1:63109000-63130600 Weak transcription Fetal Intestine Small intestine
11 chr1:63109000-63147800 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:63109200-63143000 Weak transcription Fetal Muscle Leg muscle
13 chr1:63109200-63150200 Weak transcription Fetal Brain Male brain
14 chr1:63110200-63140800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:63111400-63129800 Weak transcription Primary T cells from cord blood blood
16 chr1:63111400-63150200 Weak transcription Fetal Lung lung
17 chr1:63112400-63137600 Weak transcription Fetal Intestine Large intestine
18 chr1:63112400-63140800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr1:63112400-63142400 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr1:63112400-63142800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr1:63112400-63152400 Weak transcription Fetal Muscle Trunk muscle
22 chr1:63113200-63134600 Weak transcription iPS-18 Cell Line embryonic stem cell
23 chr1:63113400-63132800 Weak transcription A549 lung
24 chr1:63113400-63142400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr1:63113400-63142400 Weak transcription Osteobl bone
26 chr1:63113600-63151000 Weak transcription Primary hematopoietic stem cells blood
27 chr1:63113600-63152800 Weak transcription Primary B cells from cord blood blood
28 chr1:63114000-63143000 Weak transcription Aorta Aorta
29 chr1:63118000-63131200 Weak transcription Ovary ovary
30 chr1:63118000-63150800 Weak transcription Duodenum Mucosa Duodenum
31 chr1:63118200-63147600 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr1:63118800-63130400 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr1:63119000-63148000 Weak transcription Fetal Brain Female brain
34 chr1:63119600-63130600 Weak transcription Liver Liver
35 chr1:63119800-63132200 Weak transcription iPS-20b Cell Line embryonic stem cell
36 chr1:63119800-63132600 Weak transcription Cortex derived primary cultured neurospheres brain
37 chr1:63119800-63132600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr1:63119800-63134600 Weak transcription HUES48 Cell Line embryonic stem cell
39 chr1:63119800-63134800 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr1:63119800-63138800 Weak transcription Fetal Kidney kidney
41 chr1:63119800-63142400 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr1:63119800-63142400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr1:63119800-63150200 Weak transcription Adipose Nuclei Adipose
44 chr1:63120400-63136600 Weak transcription Dnd41 blood
45 chr1:63123000-63134800 Weak transcription HUES6 Cell Line embryonic stem cell
46 chr1:63123000-63140800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr1:63123000-63141200 Weak transcription Lung lung
48 chr1:63123000-63147800 Weak transcription Gastric stomach
49 chr1:63124400-63132200 Weak transcription Stomach Mucosa stomach
50 chr1:63126400-63132400 Weak transcription HepG2 liver

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Last update: Aug 31, 2015