Variant report

Variant	rs1168089
Chromosome Location	chr1:63113719-63113720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 220 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:217)

rs_ID	r²[population]
rs1002687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1007205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10157265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10158897	0.86[EUR][1000 genomes]
rs10159255	0.91[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10493322	0.86[EUR][1000 genomes]
rs10789112	0.86[EUR][1000 genomes]
rs10789113	0.86[EUR][1000 genomes]
rs10789117	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10789118	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10789119	0.95[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10789120	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10889330	0.81[EUR][1000 genomes]
rs10889331	0.82[EUR][1000 genomes]
rs10889332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs10889333	0.95[CEU][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs10889334	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs10889335	0.91[CEU][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs10889337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10889338	0.86[EUR][1000 genomes]
rs10889339	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10889340	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10889343	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889344	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889347	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889348	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10889349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889352	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10889353	0.95[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10889354	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10889356	0.90[EUR][1000 genomes]
rs10889357	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10889360	0.87[EUR][1000 genomes]
rs11207969	0.86[EUR][1000 genomes]
rs11207970	0.86[EUR][1000 genomes]
rs11207972	0.81[EUR][1000 genomes]
rs11207974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs11207976	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11207977	0.86[EUR][1000 genomes]
rs11207979	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11207980	0.86[EUR][1000 genomes]
rs11207981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11207982	0.86[EUR][1000 genomes]
rs11207983	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11207984	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11207985	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11207986	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11207990	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11207992	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs11207994	0.85[EUR][1000 genomes]
rs11207995	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11207996	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11207997	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11207999	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11208000	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11208001	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208004	0.95[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11208007	0.87[EUR][1000 genomes]
rs11485618	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11577840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11588261	0.83[EUR][1000 genomes]
rs1167996	0.86[EUR][1000 genomes]
rs1167998	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs1168001	0.82[EUR][1000 genomes]
rs1168002	0.82[EUR][1000 genomes]
rs1168003	0.82[EUR][1000 genomes]
rs1168009	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs1168010	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs1168013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168015	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168017	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168018	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168020	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168021	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1168027	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1168028	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1168029	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1168030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1168031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1168032	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1168034	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1168036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1168040	1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap]
rs1168041	0.90[MEX][hapmap];0.92[TSI][hapmap]
rs1168042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1168044	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168045	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168046	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168047	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168050	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168085	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1168086	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1168093	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1168097	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1168098	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168099	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1168102	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168103	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168107	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1168113	0.87[ASW][hapmap];0.96[CEU][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1168114	0.88[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1168124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168128	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168132	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1179765	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1183260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs1184547	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1184865	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12023489	0.85[EUR][1000 genomes]
rs12025800	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12029068	0.85[EUR][1000 genomes]
rs12037659	0.85[EUR][1000 genomes]
rs12038768	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12039115	0.89[JPT][hapmap]
rs12042319	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12047226	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12062275	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12074528	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12090886	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12116574	0.95[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12136083	0.91[CEU][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12239736	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12239737	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12403207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1305520	0.82[EUR][1000 genomes]
rs1305521	0.86[EUR][1000 genomes]
rs1472257	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1570694	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1627591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1629122	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1690755	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1690761	0.86[EUR][1000 genomes]
rs1690766	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1748195	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1748197	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1748199	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1748200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1748201	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1781195	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1781212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1781221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs1979722	0.91[CEU][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs2029763	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs2131925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2131926	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2366636	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2366638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2479464	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489835	0.83[EUR][1000 genomes]
rs28399032	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34152715	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3850634	0.95[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3913007	0.95[CEU][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs4329540	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4344355	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4350231	0.95[CEU][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs4409689	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4459145	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4495740	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4587594	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4915838	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4915840	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs583609	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs597076	0.86[EUR][1000 genomes]
rs597078	0.86[EUR][1000 genomes]
rs597470	0.86[EUR][1000 genomes]
rs598253	0.86[EUR][1000 genomes]
rs61471917	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61775910	0.82[EUR][1000 genomes]
rs624660	0.86[EUR][1000 genomes]
rs626787	0.85[EUR][1000 genomes]
rs630144	0.85[EUR][1000 genomes]
rs631106	0.85[EUR][1000 genomes]
rs634341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs636497	0.86[EUR][1000 genomes]
rs636523	0.86[EUR][1000 genomes]
rs637723	0.86[EUR][1000 genomes]
rs638305	0.86[EUR][1000 genomes]
rs641540	0.86[EUR][1000 genomes]
rs642845	0.86[EUR][1000 genomes]
rs656297	0.86[EUR][1000 genomes]
rs6587976	0.86[EUR][1000 genomes]
rs6587980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs659656	0.86[EUR][1000 genomes]
rs6657050	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6666816	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6675401	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6678483	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6682423	0.94[ASW][hapmap];0.96[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6686331	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6690733	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6693353	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6696502	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs746735	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7518497	0.87[EUR][1000 genomes]
rs7519785	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7520810	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7527004	0.86[AMR][1000 genomes]
rs7531579	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7534572	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7539035	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7548877	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7555577	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs783291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs880694	0.94[ASW][hapmap];0.96[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9436223	0.85[EUR][1000 genomes]
rs9436661	0.85[EUR][1000 genomes]
rs9787151	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9787156	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs993013	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs995000	0.95[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs998403	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs9988450	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817371	chr1:62901935-63129697	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1014376	chr1:62976472-63181359	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv870559	chr1:63057136-63113719	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1168089	DOCK7	cis	lymphoblastoid	seeQTL
rs1168089	DOCK7	cis	lesional skin	skin_eQTL
rs1168089	DOCK7	Cis_1M	lymphoblastoid	RTeQTL
rs1168089	RAB11FIP2	trans	parietal	SCAN
rs1168089	DOCK7	cis	uninvolved skin	skin_eQTL
rs1168089	ANGPTL3	cis	multi-tissue	Pritchard

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63082200-63121000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr1:63082800-63132600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:63083400-63119000	Weak transcription	Fetal Thymus	thymus
4	chr1:63084800-63121000	Weak transcription	Small Intestine	intestine
5	chr1:63088000-63134600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:63096200-63121000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:63096400-63114000	Weak transcription	Spleen	Spleen
8	chr1:63096800-63129400	Weak transcription	Esophagus	oesophagus
9	chr1:63097000-63113800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:63097800-63115400	Weak transcription	Colonic Mucosa	Colon
11	chr1:63098000-63121400	Weak transcription	HUVEC	blood vessel
12	chr1:63099600-63122800	Weak transcription	Brain Angular Gyrus	brain
13	chr1:63099600-63137000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr1:63106200-63114000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:63106200-63115200	Strong transcription	HepG2	liver
16	chr1:63107200-63120400	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:63107200-63121000	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:63107200-63122600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr1:63107200-63122600	Weak transcription	Gastric	stomach
20	chr1:63107400-63113800	Weak transcription	Aorta	Aorta
21	chr1:63107400-63117600	Weak transcription	Brain Substantia Nigra	brain
22	chr1:63107400-63118600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr1:63107400-63119400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr1:63107400-63119800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr1:63107400-63120800	Weak transcription	Thymus	Thymus
26	chr1:63107400-63121400	Weak transcription	HSMMtube	muscle
27	chr1:63107400-63122400	Weak transcription	Left Ventricle	heart
28	chr1:63107400-63122800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:63107400-63122800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:63107400-63122800	Weak transcription	Lung	lung
31	chr1:63107400-63124800	Weak transcription	Right Ventricle	heart
32	chr1:63107400-63129600	Weak transcription	NHLF	lung
33	chr1:63107400-63132200	Weak transcription	Brain Germinal Matrix	brain
34	chr1:63107400-63151200	Weak transcription	Pancreas	Pancrea
35	chr1:63107600-63147800	Weak transcription	NHEK	skin
36	chr1:63108200-63120200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr1:63108400-63114000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:63108600-63113800	Strong transcription	HSMM	muscle
39	chr1:63108600-63114000	Strong transcription	NHDF-Ad	bronchial
40	chr1:63108800-63151200	Weak transcription	Fetal Stomach	stomach
41	chr1:63109000-63124200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:63109000-63130600	Weak transcription	Fetal Intestine Small	intestine
43	chr1:63109000-63147800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr1:63109200-63114000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr1:63109200-63117200	Weak transcription	Fetal Kidney	kidney
46	chr1:63109200-63143000	Weak transcription	Fetal Muscle Leg	muscle
47	chr1:63109200-63150200	Weak transcription	Fetal Brain Male	brain
48	chr1:63109400-63113800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr1:63109400-63113800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:63109400-63118800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

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