The 2.0 version of rSNPBase

Variant report

Variant rs6696502
Chromosome Location chr1:63039533-63039534
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62939600-63040600 Weak transcription Aorta Aorta
2 chr1:62939800-63044400 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:62939800-63060200 Weak transcription Small Intestine intestine
4 chr1:62954000-63053400 Weak transcription Fetal Brain Male brain
5 chr1:62957800-63050200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:62958200-63061000 Weak transcription Lung lung
7 chr1:62994000-63051000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr1:63000200-63054400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:63003200-63045200 Weak transcription Gastric stomach
10 chr1:63005600-63050200 Weak transcription NHLF lung
11 chr1:63007200-63056200 Weak transcription Brain Anterior Caudate brain
12 chr1:63007200-63096200 Weak transcription HUVEC blood vessel
13 chr1:63007600-63040400 Weak transcription Fetal Muscle Trunk muscle
14 chr1:63007800-63040600 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr1:63008400-63053200 Weak transcription Osteobl bone
16 chr1:63010800-63078400 Weak transcription A549 lung
17 chr1:63017800-63057600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr1:63018000-63051200 Weak transcription Colonic Mucosa Colon
19 chr1:63019800-63052400 Weak transcription HMEC breast
20 chr1:63021600-63058800 Weak transcription Stomach Smooth Muscle stomach
21 chr1:63021600-63061400 Weak transcription Pancreas Pancrea
22 chr1:63024400-63053200 Weak transcription NH-A brain
23 chr1:63025000-63043600 Weak transcription Thymus Thymus
24 chr1:63026400-63052200 Weak transcription Primary B cells from cord blood blood
25 chr1:63026400-63053400 Weak transcription Primary T cells from cord blood blood
26 chr1:63026800-63050200 Weak transcription HSMMtube muscle
27 chr1:63027000-63040800 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr1:63027000-63051400 Weak transcription Placenta Placenta
29 chr1:63027200-63039800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr1:63027200-63050400 Weak transcription Muscle Satellite Cultured Cells --
31 chr1:63028800-63052800 Weak transcription Esophagus oesophagus
32 chr1:63029000-63040400 Weak transcription Fetal Stomach stomach
33 chr1:63034200-63051000 Weak transcription HepG2 liver
34 chr1:63034600-63040600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr1:63035200-63050000 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr1:63035200-63053600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:63036600-63045200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:63036800-63043000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:63036800-63045400 Weak transcription Right Ventricle heart
40 chr1:63036800-63058600 Weak transcription Fetal Brain Female brain
41 chr1:63036800-63113600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr1:63037000-63041200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:63037400-63045200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr1:63037600-63045000 Strong transcription Fetal Intestine Large intestine
45 chr1:63037600-63055000 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr1:63037800-63043400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
47 chr1:63038400-63039600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr1:63038400-63040000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr1:63038400-63040400 Weak transcription Fetal Intestine Small intestine
50 chr1:63038400-63040600 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015