The 2.0 version of rSNPBase

Variant report

Variant rs1168009
Chromosome Location chr1:62943954-62943955
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62909800-62977000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:62915400-62966600 Weak transcription Primary T cells fromperipheralblood blood
3 chr1:62916000-62977200 Weak transcription Right Ventricle heart
4 chr1:62916200-62960000 Weak transcription Spleen Spleen
5 chr1:62916200-62963200 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr1:62916600-62976600 Weak transcription Psoas Muscle Psoas
7 chr1:62918800-62950000 Weak transcription GM12878-XiMat blood
8 chr1:62918800-62950800 Weak transcription K562 blood
9 chr1:62919000-62959200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr1:62920000-62971000 Weak transcription Thymus Thymus
11 chr1:62920000-62980200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr1:62922600-62982000 Weak transcription A549 lung
13 chr1:62923200-62979200 Weak transcription Fetal Thymus thymus
14 chr1:62932200-62949200 Weak transcription Primary B cells from peripheral blood blood
15 chr1:62934400-62981200 Weak transcription Stomach Mucosa stomach
16 chr1:62934600-62944000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:62937400-62957200 Weak transcription Colonic Mucosa Colon
18 chr1:62937400-62960000 Weak transcription Pancreas Pancrea
19 chr1:62937600-62957000 Weak transcription Lung lung
20 chr1:62938000-62960000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:62938000-62966600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr1:62938800-62956600 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:62938800-62973800 Weak transcription Esophagus oesophagus
24 chr1:62939000-62957000 Weak transcription HSMMtube muscle
25 chr1:62939200-62978200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr1:62939600-62946000 Weak transcription Fetal Intestine Small intestine
27 chr1:62939600-62954800 Weak transcription Fetal Stomach stomach
28 chr1:62939600-62956600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr1:62939600-62999800 Weak transcription Gastric stomach
30 chr1:62939600-63040600 Weak transcription Aorta Aorta
31 chr1:62939800-62956800 Weak transcription Left Ventricle heart
32 chr1:62939800-62961600 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr1:62939800-63044400 Weak transcription Placenta Amnion Placenta Amnion
34 chr1:62939800-63060200 Weak transcription Small Intestine intestine
35 chr1:62941000-62959200 Weak transcription Colon Smooth Muscle Colon
36 chr1:62941000-63001000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr1:62941200-62955800 Weak transcription Fetal Muscle Trunk muscle
38 chr1:62941200-62955800 Weak transcription Fetal Muscle Leg muscle
39 chr1:62941200-62956800 Weak transcription Primary T cells from cord blood blood
40 chr1:62941400-62946800 Weak transcription Brain Germinal Matrix brain
41 chr1:62941400-62953200 Weak transcription Fetal Brain Male brain
42 chr1:62941600-62944000 Enhancers HUES6 Cell Line embryonic stem cell
43 chr1:62941600-62944400 Weak transcription HepG2 liver
44 chr1:62941600-62946200 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr1:62941600-62946600 Weak transcription Fetal Intestine Large intestine
46 chr1:62941600-62946800 Weak transcription Primary hematopoietic stem cells blood
47 chr1:62941600-62946800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr1:62941600-62950000 Weak transcription Primary B cells from cord blood blood
49 chr1:62941600-62950600 Weak transcription Primary monocytes fromperipheralblood blood
50 chr1:62941600-62956400 Weak transcription HMEC breast

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Last update: Aug 31, 2015