The 2.0 version of rSNPBase

Variant report

Variant rs10889348
Chromosome Location chr1:63078222-63078223
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:63007200-63096200 Weak transcription HUVEC blood vessel
2 chr1:63010800-63078400 Weak transcription A549 lung
3 chr1:63036800-63113600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:63038400-63087600 Weak transcription NHEK skin
5 chr1:63038400-63095600 Weak transcription Brain Germinal Matrix brain
6 chr1:63038600-63083000 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr1:63039200-63095200 Weak transcription Ovary ovary
8 chr1:63041000-63095200 Weak transcription Fetal Muscle Leg muscle
9 chr1:63041000-63095600 Weak transcription Fetal Stomach stomach
10 chr1:63042200-63083600 Weak transcription Fetal Muscle Trunk muscle
11 chr1:63050600-63083800 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr1:63051800-63083400 Weak transcription Fetal Lung lung
13 chr1:63051800-63096000 Weak transcription Left Ventricle heart
14 chr1:63052400-63083800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:63052600-63084400 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr1:63054800-63079800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:63054800-63087600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr1:63057000-63082800 Weak transcription Brain Anterior Caudate brain
19 chr1:63057000-63083800 Weak transcription Adipose Nuclei Adipose
20 chr1:63063200-63085000 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr1:63065200-63079000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr1:63065400-63087800 Weak transcription Stomach Mucosa stomach
23 chr1:63066800-63112200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
24 chr1:63067800-63079400 Weak transcription Muscle Satellite Cultured Cells --
25 chr1:63068000-63079400 Weak transcription Osteobl bone
26 chr1:63068400-63095200 Weak transcription Duodenum Mucosa Duodenum
27 chr1:63070400-63082800 Weak transcription NHDF-Ad bronchial
28 chr1:63072000-63089400 Weak transcription Fetal Kidney kidney
29 chr1:63072000-63095800 Weak transcription Primary T cells from cord blood blood
30 chr1:63074400-63095600 Weak transcription Fetal Intestine Small intestine
31 chr1:63074400-63099000 Weak transcription Brain Hippocampus Middle brain
32 chr1:63074600-63084400 Weak transcription Fetal Intestine Large intestine
33 chr1:63075000-63083000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr1:63075200-63095200 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr1:63075400-63095600 Weak transcription Fetal Brain Female brain
36 chr1:63075400-63095600 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr1:63075600-63079400 Weak transcription HepG2 liver
38 chr1:63075600-63087600 Weak transcription HSMMtube muscle
39 chr1:63075600-63095600 Weak transcription Stomach Smooth Muscle stomach
40 chr1:63075600-63106600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:63075800-63095800 Weak transcription Aorta Aorta
42 chr1:63075800-63099000 Weak transcription Fetal Brain Male brain
43 chr1:63076000-63078600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr1:63076200-63080000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr1:63076200-63086000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:63076400-63079000 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr1:63076400-63097000 Weak transcription Primary T killer memory cells from peripheral blood blood
48 chr1:63076600-63078800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr1:63076600-63078800 Weak transcription iPS-20b Cell Line embryonic stem cell
50 chr1:63076600-63080600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015