Variant report

Variant	rs2131925
Chromosome Location	chr1:63025942-63025943
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 223 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:221)

rs_ID	r²[population]
rs1002687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1007205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs10157265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10158897	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs10159255	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10493322	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs10789112	0.90[EUR][1000 genomes]
rs10789113	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10789117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10789118	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10789119	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10789120	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10889330	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10889331	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10889332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10889333	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs10889334	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs10889335	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs10889337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889338	0.91[EUR][1000 genomes]
rs10889339	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889340	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889344	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889348	0.95[EUR][1000 genomes]
rs10889349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889352	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10889353	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs10889354	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10889356	0.87[EUR][1000 genomes]
rs10889357	0.87[EUR][1000 genomes]
rs10889360	0.85[EUR][1000 genomes]
rs11207969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11207970	0.90[EUR][1000 genomes]
rs11207972	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11207974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11207976	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207977	0.91[EUR][1000 genomes]
rs11207979	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207980	0.91[EUR][1000 genomes]
rs11207981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207982	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11207983	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11207984	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11207985	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11207986	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11207990	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207992	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs11207994	0.87[EUR][1000 genomes]
rs11207995	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11207996	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11207997	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207999	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11208000	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11208001	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11208004	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs11208007	0.85[EUR][1000 genomes]
rs11485618	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11577840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11588261	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1167996	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1167998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1168001	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1168002	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1168003	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1168009	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1168010	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1168013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1168015	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1168017	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1168018	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1168020	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1168021	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1168022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1168023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1168026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168027	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168028	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168029	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1168032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168034	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168040	0.95[CEU][hapmap];0.94[CHB][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1168044	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1168045	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1168046	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1168047	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1168050	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1168085	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168086	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1168089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168093	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1168097	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1168098	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1168102	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168103	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168107	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1168113	0.96[CEU][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1168114	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1168124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168128	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1168132	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1177541	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1179765	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1183260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1184547	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1184865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12023489	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12025800	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12029068	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12037659	0.90[EUR][1000 genomes]
rs12038768	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12039115	0.89[JPT][hapmap]
rs12042319	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12047226	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12062275	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12074528	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12090886	1.00[CEU][hapmap];0.95[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12116574	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12124281	0.85[ASN][1000 genomes]
rs12136083	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs12239736	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12239737	0.90[EUR][1000 genomes]
rs12403207	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1305520	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1305521	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1472257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570694	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1627591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1629122	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1690755	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1690761	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1690766	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1748195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1748197	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1748199	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1748200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1748201	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1781195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1781212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1781221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1979722	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs2029763	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2131926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2366636	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2366638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2479464	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2489835	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28399032	0.86[EUR][1000 genomes]
rs34152715	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3850634	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3913007	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs4329540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4344355	0.86[EUR][1000 genomes]
rs4350231	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs4409689	0.85[AMR][1000 genomes]
rs4459145	0.86[EUR][1000 genomes]
rs4495740	0.95[EUR][1000 genomes]
rs4587594	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4915838	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4915840	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs583609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs597076	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs597078	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs597470	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs598253	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61471917	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61775910	0.86[EUR][1000 genomes]
rs624660	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs626787	1.00[CHB][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs630144	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs631106	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs634341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs636497	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs636523	0.90[EUR][1000 genomes]
rs637723	0.96[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs638305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs641540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs642845	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs656297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6587976	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6587980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs659656	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6657050	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6666816	0.85[AMR][1000 genomes]
rs6675401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6678483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6682423	0.96[CEU][hapmap];0.85[AMR][1000 genomes]
rs6686331	0.85[AMR][1000 genomes]
rs6690733	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6693353	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6696502	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746735	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7518497	0.85[EUR][1000 genomes]
rs7519785	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520810	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7527004	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7531579	0.89[EUR][1000 genomes]
rs7534572	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7539035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7547965	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7548877	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7555577	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs783291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs880694	0.96[CEU][hapmap];0.85[AMR][1000 genomes]
rs9436221	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9436222	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9436223	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9436661	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9787151	0.85[AMR][1000 genomes]
rs9787156	0.85[AMR][1000 genomes]
rs993013	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs995000	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs998403	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs9988450	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817371	chr1:62901935-63129697	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1014376	chr1:62976472-63181359	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

Variant related diseases (count:6)

Disease	PMID	Source
Triglycerides	24097068	GWAS catalog
Cholesterol, total	20686565	GWAS catalog
LDL cholesterol	24097068	GWAS catalog
Triglycerides	20686565	GWAS catalog
Cholesterol, total	24097068	GWAS catalog
LDL cholesterol	20686565	GWAS catalog

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2131925	DOCK7	cis	uninvolved skin	skin_eQTL
rs2131925	DOCK7	cis	lesional skin	skin_eQTL
rs2131925	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62939600-63040600	Weak transcription	Aorta	Aorta
2	chr1:62939800-63044400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:62939800-63060200	Weak transcription	Small Intestine	intestine
4	chr1:62941800-63030200	Weak transcription	Brain Angular Gyrus	brain
5	chr1:62954000-63053400	Weak transcription	Fetal Brain Male	brain
6	chr1:62957800-63050200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:62958200-63061000	Weak transcription	Lung	lung
8	chr1:62979200-63026200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:62979600-63030200	Weak transcription	NHEK	skin
10	chr1:62984200-63028000	Weak transcription	Esophagus	oesophagus
11	chr1:62985400-63026200	Weak transcription	Primary B cells from cord blood	blood
12	chr1:62991000-63027200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:62994000-63051000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:62994800-63028600	Weak transcription	Right Ventricle	heart
15	chr1:62995000-63030200	Weak transcription	Spleen	Spleen
16	chr1:63000200-63037000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:63000200-63054400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:63001400-63028400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:63003000-63037400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:63003200-63026400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr1:63003200-63045200	Weak transcription	Gastric	stomach
22	chr1:63005400-63037400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:63005400-63037400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:63005600-63030000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:63005600-63050200	Weak transcription	NHLF	lung
26	chr1:63007200-63056200	Weak transcription	Brain Anterior Caudate	brain
27	chr1:63007200-63096200	Weak transcription	HUVEC	blood vessel
28	chr1:63007600-63040400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr1:63007800-63028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr1:63007800-63037400	Weak transcription	Left Ventricle	heart
31	chr1:63007800-63040600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr1:63008400-63038000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:63008400-63053200	Weak transcription	Osteobl	bone
34	chr1:63008600-63037400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr1:63009600-63037800	Weak transcription	HSMM	muscle
36	chr1:63010800-63078400	Weak transcription	A549	lung
37	chr1:63012600-63029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:63013800-63027600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr1:63015800-63026200	Weak transcription	Fetal Lung	lung
40	chr1:63016200-63026200	Weak transcription	Fetal Kidney	kidney
41	chr1:63017800-63027000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:63017800-63057600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr1:63018000-63051200	Weak transcription	Colonic Mucosa	Colon
44	chr1:63019200-63028000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr1:63019600-63028200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr1:63019600-63028400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:63019800-63052400	Weak transcription	HMEC	breast
48	chr1:63020000-63028000	Weak transcription	Fetal Stomach	stomach
49	chr1:63020000-63028400	Weak transcription	Fetal Intestine Small	intestine
50	chr1:63020200-63027600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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