Variant report

Variant	rs12025800
Chromosome Location	chr1:63096781-63096782
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 222 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:218)

rs_ID	r²[population]
rs1002687	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10157265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10158897	0.88[EUR][1000 genomes]
rs10159255	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10493322	0.88[EUR][1000 genomes]
rs10789112	0.88[EUR][1000 genomes]
rs10789113	0.89[EUR][1000 genomes]
rs10789117	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789118	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10789119	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10789120	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10889330	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10889331	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10889332	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10889333	0.87[EUR][1000 genomes]
rs10889334	0.88[EUR][1000 genomes]
rs10889335	0.81[EUR][1000 genomes]
rs10889337	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10889338	0.89[EUR][1000 genomes]
rs10889339	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10889340	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10889343	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889344	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889347	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889348	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10889349	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889350	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889352	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10889353	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10889354	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10889356	0.87[EUR][1000 genomes]
rs10889357	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10889360	0.85[EUR][1000 genomes]
rs11207969	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11207970	0.88[EUR][1000 genomes]
rs11207972	0.83[EUR][1000 genomes]
rs11207974	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11207976	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11207977	0.89[EUR][1000 genomes]
rs11207979	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11207980	0.89[EUR][1000 genomes]
rs11207981	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11207982	0.89[EUR][1000 genomes]
rs11207983	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11207984	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11207985	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11207986	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11207990	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11207992	0.97[EUR][1000 genomes]
rs11207994	0.87[EUR][1000 genomes]
rs11207995	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11207996	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11207997	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207999	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208000	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208001	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11208004	0.90[EUR][1000 genomes]
rs11208007	0.85[EUR][1000 genomes]
rs11485618	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11577840	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11588261	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1167996	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167998	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1168001	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1168002	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1168003	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1168009	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1168010	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1168013	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168015	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168017	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168018	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168020	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168021	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168022	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168023	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168026	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1168027	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1168028	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1168029	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1168030	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1168031	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168032	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1168034	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1168036	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1168040	0.88[ASN][1000 genomes]
rs1168042	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1168044	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168045	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168046	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168047	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168050	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168085	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168086	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1168089	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168093	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1168097	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1168098	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1168099	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1168102	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168103	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168107	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1168113	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1168114	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1168124	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1168128	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1168132	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1177541	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1179765	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1183260	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1184547	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1184865	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12023489	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12029068	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12037659	0.87[EUR][1000 genomes]
rs12038768	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12042319	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12047226	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12062275	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12074528	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12090886	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12116574	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12124281	0.82[ASN][1000 genomes]
rs12136083	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12239736	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12239737	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12403207	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1305520	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1305521	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1472257	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1570694	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1627591	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1629122	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1690755	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1690761	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1690766	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1748195	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1748197	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1748199	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1748200	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1748201	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1781195	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1781212	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1979722	0.87[EUR][1000 genomes]
rs2029763	0.89[EUR][1000 genomes]
rs2131925	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2131926	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2366636	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2366638	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2479464	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2489835	0.85[EUR][1000 genomes]
rs28399032	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34152715	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3850634	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3913007	0.88[EUR][1000 genomes]
rs4329540	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4344355	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4350231	0.83[EUR][1000 genomes]
rs4409689	0.85[AMR][1000 genomes]
rs4459145	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4495740	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4587594	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4915838	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4915840	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs583609	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs597076	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs597078	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs597470	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs598253	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61471917	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61775910	0.84[EUR][1000 genomes]
rs624660	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs626787	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs630144	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs631106	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs634341	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs636497	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs636523	0.88[EUR][1000 genomes]
rs637723	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs638305	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs641540	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs642845	0.89[EUR][1000 genomes]
rs656297	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6587976	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6587980	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659656	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6657050	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6666816	0.85[AMR][1000 genomes]
rs6675401	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6678483	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6682423	0.85[AMR][1000 genomes]
rs6686331	0.85[AMR][1000 genomes]
rs6690733	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693353	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6696502	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs746735	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7518497	0.85[EUR][1000 genomes]
rs7519785	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7520810	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527004	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7531579	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7534572	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7539035	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547965	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7548877	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7555577	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs783291	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs880694	0.85[AMR][1000 genomes]
rs9436221	0.81[EUR][1000 genomes]
rs9436222	0.81[EUR][1000 genomes]
rs9436223	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9436661	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9787151	0.85[AMR][1000 genomes]
rs9787156	0.85[AMR][1000 genomes]
rs993013	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs995000	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs998403	0.88[EUR][1000 genomes]
rs9988450	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817371	chr1:62901935-63129697	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1014376	chr1:62976472-63181359	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv870559	chr1:63057136-63113719	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1000988	chr1:63061791-63107526	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12025800	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63036800-63113600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:63066800-63112200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:63074400-63099000	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:63075600-63106600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:63075800-63099000	Weak transcription	Fetal Brain Male	brain
6	chr1:63076400-63097000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:63079200-63098800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:63079200-63099000	Weak transcription	Brain Angular Gyrus	brain
9	chr1:63079800-63108800	Weak transcription	Primary B cells from cord blood	blood
10	chr1:63082200-63099200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:63082200-63121000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr1:63082400-63098800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:63082800-63132600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:63083400-63119000	Weak transcription	Fetal Thymus	thymus
15	chr1:63084800-63121000	Weak transcription	Small Intestine	intestine
16	chr1:63085400-63113600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:63085800-63097000	Weak transcription	Colonic Mucosa	Colon
18	chr1:63086400-63110600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr1:63087400-63098800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:63087800-63106200	Weak transcription	Gastric	stomach
21	chr1:63087800-63106600	Weak transcription	Pancreas	Pancrea
22	chr1:63088000-63105200	Weak transcription	Fetal Heart	heart
23	chr1:63088000-63105400	Weak transcription	Hela-S3	cervix
24	chr1:63088000-63111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:63088000-63134600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr1:63088200-63101200	Weak transcription	Stomach Mucosa	stomach
27	chr1:63089200-63105200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:63089600-63098600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr1:63089800-63099000	Weak transcription	A549	lung
30	chr1:63090600-63097800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr1:63092400-63099000	Weak transcription	GM12878-XiMat	blood
32	chr1:63092400-63101800	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr1:63093800-63100000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:63093800-63101000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:63094000-63098200	Weak transcription	Psoas Muscle	Psoas
36	chr1:63094000-63106400	Weak transcription	Brain Substantia Nigra	brain
37	chr1:63094200-63099000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr1:63094400-63099200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:63094600-63103600	Strong transcription	NHDF-Ad	bronchial
40	chr1:63094600-63106600	Weak transcription	Right Ventricle	heart
41	chr1:63094800-63100400	Strong transcription	Dnd41	blood
42	chr1:63095000-63099000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:63095000-63099200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:63095000-63099600	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr1:63095000-63099600	Strong transcription	Fetal Lung	lung
46	chr1:63095000-63102000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr1:63095000-63102000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr1:63095200-63096800	Strong transcription	Fetal Muscle Leg	muscle
49	chr1:63095200-63097000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr1:63095200-63097200	Strong transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links