Variant report

Variant	rs10889360
Chromosome Location	chr1:63173918-63173919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10157265	0.85[EUR][1000 genomes]
rs10159255	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10789113	0.80[AMR][1000 genomes]
rs10789117	0.85[EUR][1000 genomes]
rs10789118	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10789119	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10789120	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10889338	0.81[AMR][1000 genomes]
rs10889342	0.81[AMR][1000 genomes]
rs10889343	0.85[EUR][1000 genomes]
rs10889344	0.85[EUR][1000 genomes]
rs10889347	0.85[EUR][1000 genomes]
rs10889348	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10889349	0.85[EUR][1000 genomes]
rs10889350	0.85[EUR][1000 genomes]
rs10889352	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10889353	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10889354	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10889356	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10889357	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889364	0.84[ASN][1000 genomes]
rs11207977	0.82[AMR][1000 genomes]
rs11207980	0.81[AMR][1000 genomes]
rs11207982	0.80[AMR][1000 genomes]
rs11207990	0.85[EUR][1000 genomes]
rs11207992	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11207994	0.83[AMR][1000 genomes]
rs11207995	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11207996	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11207997	0.85[EUR][1000 genomes]
rs11207999	0.84[EUR][1000 genomes]
rs11208000	0.85[EUR][1000 genomes]
rs11208001	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11208004	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11208007	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11485618	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1168085	0.87[EUR][1000 genomes]
rs1168086	0.87[EUR][1000 genomes]
rs1168089	0.87[EUR][1000 genomes]
rs1168093	0.87[EUR][1000 genomes]
rs1168097	0.87[EUR][1000 genomes]
rs1168098	0.87[EUR][1000 genomes]
rs1168099	0.87[EUR][1000 genomes]
rs1168102	0.87[EUR][1000 genomes]
rs1168103	0.87[EUR][1000 genomes]
rs1168107	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1168113	0.89[EUR][1000 genomes]
rs1168114	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168124	0.86[EUR][1000 genomes]
rs1168132	0.83[EUR][1000 genomes]
rs12023282	0.84[ASN][1000 genomes]
rs12024044	0.84[ASN][1000 genomes]
rs12025111	0.82[ASN][1000 genomes]
rs12025800	0.85[EUR][1000 genomes]
rs12026283	0.84[ASN][1000 genomes]
rs12027341	0.84[ASN][1000 genomes]
rs12028944	0.84[ASN][1000 genomes]
rs12029452	0.84[ASN][1000 genomes]
rs12031537	0.89[ASN][1000 genomes]
rs12038768	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12041843	0.90[ASN][1000 genomes]
rs12042319	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12043910	0.89[ASN][1000 genomes]
rs12047226	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12049254	0.84[ASN][1000 genomes]
rs12116574	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12136083	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239736	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12239737	0.82[AMR][1000 genomes]
rs1472257	0.85[EUR][1000 genomes]
rs1570694	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1629122	0.84[EUR][1000 genomes]
rs1748195	0.84[EUR][1000 genomes]
rs1748197	0.85[EUR][1000 genomes]
rs1748199	0.85[EUR][1000 genomes]
rs1748200	0.84[EUR][1000 genomes]
rs1748201	0.84[EUR][1000 genomes]
rs2029763	0.84[AMR][1000 genomes]
rs2131925	0.85[EUR][1000 genomes]
rs2131926	0.85[EUR][1000 genomes]
rs2366636	0.85[EUR][1000 genomes]
rs2366638	0.85[EUR][1000 genomes]
rs2479464	0.86[EUR][1000 genomes]
rs28399032	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34152715	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3850634	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4329540	0.85[EUR][1000 genomes]
rs4344355	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4409689	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4495740	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4587594	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61471917	0.85[EUR][1000 genomes]
rs6587980	0.85[EUR][1000 genomes]
rs6666816	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6675401	0.85[EUR][1000 genomes]
rs6678483	0.85[EUR][1000 genomes]
rs6682423	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6686331	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6690733	0.85[EUR][1000 genomes]
rs6693353	0.81[EUR][1000 genomes]
rs6696502	0.85[EUR][1000 genomes]
rs746735	0.87[EUR][1000 genomes]
rs7518497	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7519785	0.84[EUR][1000 genomes]
rs7520810	0.85[EUR][1000 genomes]
rs7531579	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7539035	0.85[EUR][1000 genomes]
rs880694	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9787151	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9787156	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs993013	0.84[EUR][1000 genomes]
rs995000	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014376	chr1:62976472-63181359	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10889360	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63157600-63180800	Weak transcription	Fetal Brain Male	brain
2	chr1:63163600-63186600	Weak transcription	HepG2	liver
3	chr1:63171200-63174600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr1:63171200-63186800	Weak transcription	Fetal Stomach	stomach
5	chr1:63171400-63186400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:63172000-63174000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr1:63172000-63186600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:63172000-63186600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:63173000-63174000	Enhancers	Fetal Intestine Large	intestine
10	chr1:63173000-63174000	Enhancers	Fetal Intestine Small	intestine
11	chr1:63173000-63174000	Enhancers	Fetal Kidney	kidney
12	chr1:63173000-63174200	Enhancers	Duodenum Mucosa	Duodenum
13	chr1:63173200-63176200	Enhancers	Stomach Mucosa	stomach
14	chr1:63173600-63174000	Enhancers	HSMMtube	muscle
15	chr1:63173800-63174000	Enhancers	Rectal Mucosa Donor 29	rectum

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