Variant report

Variant	rs12049254
Chromosome Location	chr1:63197152-63197153
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10789123	0.90[EUR][1000 genomes]
rs10889356	0.80[ASN][1000 genomes]
rs10889357	0.84[ASN][1000 genomes]
rs10889360	0.84[ASN][1000 genomes]
rs10889364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208007	0.81[ASN][1000 genomes]
rs12023282	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12026283	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12028944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12029452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12031537	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12041843	0.91[ASN][1000 genomes]
rs12043910	0.95[ASN][1000 genomes]
rs12121288	0.90[EUR][1000 genomes]
rs12136083	0.84[ASN][1000 genomes]
rs12563557	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4630152	0.88[EUR][1000 genomes]
rs4915624	0.86[EUR][1000 genomes]
rs6664692	0.89[EUR][1000 genomes]
rs72915166	0.85[EUR][1000 genomes]
rs7517372	0.88[EUR][1000 genomes]
rs7518497	0.84[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63187400-63198000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:63191800-63198000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:63191800-63199400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:63192000-63197800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:63192000-63201200	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:63192200-63198000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:63193600-63198000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:63193800-63197800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:63193800-63198000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:63193800-63201400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:63194000-63197600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:63194000-63197800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:63194200-63197600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:63194200-63197800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:63194200-63199400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:63194600-63202000	Enhancers	HepG2	liver
17	chr1:63195200-63198000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:63195200-63198000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:63195200-63201200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:63195400-63197800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr1:63195600-63199600	Weak transcription	Stomach Mucosa	stomach
22	chr1:63195800-63198000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:63196000-63199600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr1:63197000-63198000	Weak transcription	Fetal Intestine Large	intestine

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