Variant report

Variant	rs12563557
Chromosome Location	chr1:63204498-63204499
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10789123	0.88[EUR][1000 genomes]
rs10889364	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11207998	0.83[YRI][hapmap]
rs12023282	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12024044	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12025111	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12026283	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12027341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12028944	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12029452	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12031537	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12049254	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12121288	0.88[EUR][1000 genomes]
rs4630152	0.86[EUR][1000 genomes]
rs4915624	0.84[EUR][1000 genomes]
rs6664692	0.87[EUR][1000 genomes]
rs72915166	0.83[EUR][1000 genomes]
rs7517372	0.85[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63200200-63210600	Weak transcription	Fetal Stomach	stomach
2	chr1:63200200-63212200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:63202000-63210800	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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