Variant report

Variant	rs12029452
Chromosome Location	chr1:63193270-63193271
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:63186584..63188950-chr1:63191033..63193333,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10789123	0.90[EUR][1000 genomes]
rs10889356	0.80[ASN][1000 genomes]
rs10889357	0.84[ASN][1000 genomes]
rs10889360	0.84[ASN][1000 genomes]
rs10889364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208007	0.81[ASN][1000 genomes]
rs12023282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024044	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025111	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12026283	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12028944	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12031537	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12041843	0.91[ASN][1000 genomes]
rs12043910	0.95[ASN][1000 genomes]
rs12049254	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121288	0.90[EUR][1000 genomes]
rs12136083	0.84[ASN][1000 genomes]
rs12563557	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4630152	0.88[EUR][1000 genomes]
rs4915624	0.86[EUR][1000 genomes]
rs6664692	0.89[EUR][1000 genomes]
rs72915166	0.85[EUR][1000 genomes]
rs7517372	0.88[EUR][1000 genomes]
rs7518497	0.84[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63187200-63195200	Weak transcription	Fetal Stomach	stomach
2	chr1:63187400-63198000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:63188600-63194200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:63189800-63193800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr1:63190200-63195800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:63190400-63193600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr1:63190400-63194800	Weak transcription	Brain Angular Gyrus	brain
8	chr1:63191200-63193400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:63191200-63194600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr1:63191200-63194800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr1:63191600-63193400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:63191800-63193400	Weak transcription	Aorta	Aorta
13	chr1:63191800-63193400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr1:63191800-63194600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:63191800-63198000	Weak transcription	Fetal Intestine Small	intestine
16	chr1:63191800-63199400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr1:63192000-63193400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:63192000-63193400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:63192000-63193400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:63192000-63193400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:63192000-63193400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:63192000-63193400	Weak transcription	Brain Anterior Caudate	brain
23	chr1:63192000-63193400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr1:63192000-63193400	Weak transcription	Stomach Mucosa	stomach
25	chr1:63192000-63193400	Weak transcription	NHDF-Ad	bronchial
26	chr1:63192000-63193400	Weak transcription	NHLF	lung
27	chr1:63192000-63193600	Weak transcription	Ovary	ovary
28	chr1:63192000-63194000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:63192000-63194200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:63192000-63194200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:63192000-63194400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:63192000-63194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr1:63192000-63194800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr1:63192000-63197800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr1:63192000-63201200	Weak transcription	Colon Smooth Muscle	Colon
36	chr1:63192200-63194600	Weak transcription	HepG2	liver
37	chr1:63192200-63194800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr1:63192200-63198000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr1:63192800-63193800	Enhancers	Muscle Satellite Cultured Cells	--
40	chr1:63192800-63193800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr1:63193000-63193600	Enhancers	Colonic Mucosa	Colon
42	chr1:63193000-63193800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:63193200-63193400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:63193200-63193400	Enhancers	Brain Substantia Nigra	brain
45	chr1:63193200-63193400	Flanking Active TSS	Osteobl	bone
46	chr1:63193200-63193600	Enhancers	Brain Hippocampus Middle	brain
47	chr1:63193200-63193600	Enhancers	NH-A	brain
48	chr1:63193200-63193800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr1:63193200-63193800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:63193200-63193800	Enhancers	Fetal Brain Female	brain

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