Variant report

Variant	rs4630152
Chromosome Location	chr1:63199272-63199273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:62995282..62997761-chr1:63198205..63200878,2	K562	blood:

Variant related genes	Relation type
ENSG00000270549	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10159255	0.86[CHD][hapmap]
rs10789119	0.86[CHD][hapmap]
rs10789123	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889353	0.86[CHD][hapmap]
rs10889364	0.88[EUR][1000 genomes]
rs11207995	0.86[CHD][hapmap]
rs11208004	0.86[CHD][hapmap]
rs11208009	0.93[ASN][1000 genomes]
rs1168107	0.86[ASN][1000 genomes]
rs1168113	0.86[CHD][hapmap];0.85[JPT][hapmap]
rs1168114	0.86[CHD][hapmap]
rs12023282	0.88[EUR][1000 genomes]
rs12024044	0.88[EUR][1000 genomes]
rs12025111	0.88[EUR][1000 genomes]
rs12026283	0.88[EUR][1000 genomes]
rs12027341	0.88[EUR][1000 genomes]
rs12028944	0.87[EUR][1000 genomes]
rs12029452	0.88[EUR][1000 genomes]
rs12031537	0.83[EUR][1000 genomes]
rs12048208	0.82[CHD][hapmap]
rs12049254	0.88[EUR][1000 genomes]
rs12116574	0.86[CHD][hapmap]
rs12121288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136083	0.86[CHD][hapmap]
rs12563557	0.86[EUR][1000 genomes]
rs1570694	0.86[CHD][hapmap]
rs1748199	0.86[CHD][hapmap]
rs3850634	0.86[CHD][hapmap]
rs4409689	0.86[ASN][1000 genomes]
rs4587594	0.86[CHD][hapmap]
rs4915624	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4915853	0.85[ASN][1000 genomes]
rs6664692	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666816	0.86[ASN][1000 genomes]
rs6679002	0.93[ASN][1000 genomes]
rs6682423	0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6686331	0.86[ASN][1000 genomes]
rs72915166	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517372	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs880694	0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9787151	0.86[ASN][1000 genomes]
rs9787156	0.86[ASN][1000 genomes]
rs995000	0.86[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4630152	FAM162A	trans	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63191800-63199400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:63192000-63201200	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:63193800-63201400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:63194200-63199400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:63194600-63202000	Enhancers	HepG2	liver
6	chr1:63195200-63201200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:63195600-63199600	Weak transcription	Stomach Mucosa	stomach
8	chr1:63196000-63199600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:63198000-63201600	Enhancers	Liver	Liver
10	chr1:63198200-63199600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:63198400-63199600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:63198400-63199800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:63198600-63199600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:63198600-63199600	Weak transcription	Fetal Intestine Large	intestine
15	chr1:63199000-63199400	Weak transcription	Fetal Intestine Small	intestine
16	chr1:63199000-63199400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:63199000-63201200	Weak transcription	Fetal Muscle Leg	muscle

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