Variant report

Variant	rs1570694
Chromosome Location	chr1:63103217-63103218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:63103107-63103706	K562	blood:	n/a	chr1:63103558-63103568 chr1:63103247-63103262 chr1:63103559-63103568
2	MAFF	chr1:63103090-63103435	HepG2	liver:	n/a	chr1:63103245-63103263
3	MAFK	chr1:63103080-63103413	IMR90	lung:	n/a	chr1:63103247-63103262
4	MAFK	chr1:63103090-63103433	HepG2	liver:	n/a	chr1:63103247-63103262
5	MAFF	chr1:63103100-63103666	K562	blood:	n/a	chr1:63103245-63103263
6	MAFK	chr1:63103077-63103433	HepG2	liver:	n/a	chr1:63103247-63103262

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:63102529..63105125-chr5:46100658..46103318,2	MCF-7	breast:

Variant related genes	Relation type
DOCK7	TF binding region

Extended variants
information (count: 231 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:227)

rs_ID	r²[population]
rs1002687	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs1007205	0.95[CEU][hapmap]
rs10157265	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10158897	0.95[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10159255	1.00[ASW][hapmap];0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10493322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10789112	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10789113	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10789117	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10789118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789119	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789120	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889330	0.83[EUR][1000 genomes]
rs10889331	0.83[EUR][1000 genomes]
rs10889332	0.95[CEU][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs10889333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10889334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10889335	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10889337	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10889338	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10889339	0.89[EUR][1000 genomes]
rs10889340	0.89[EUR][1000 genomes]
rs10889342	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10889343	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10889344	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10889347	0.95[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10889348	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10889349	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10889350	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10889352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889353	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889354	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889356	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10889357	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10889360	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11207969	0.95[CEU][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs11207970	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11207972	0.83[EUR][1000 genomes]
rs11207974	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs11207976	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11207977	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11207979	0.89[EUR][1000 genomes]
rs11207980	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11207981	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs11207982	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11207983	0.89[EUR][1000 genomes]
rs11207984	0.89[EUR][1000 genomes]
rs11207985	0.89[EUR][1000 genomes]
rs11207986	0.89[EUR][1000 genomes]
rs11207990	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11207992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11207994	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11207995	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11207996	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11207997	0.83[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11207998	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11207999	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11208000	0.90[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11208001	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11208004	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11208007	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11485618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11577840	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs11588261	0.85[EUR][1000 genomes]
rs1167996	0.88[EUR][1000 genomes]
rs1167998	0.95[CEU][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs1168001	0.83[EUR][1000 genomes]
rs1168002	0.83[EUR][1000 genomes]
rs1168003	0.83[EUR][1000 genomes]
rs1168009	0.91[CEU][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs1168010	0.91[CEU][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs1168013	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1168015	0.87[EUR][1000 genomes]
rs1168017	0.89[EUR][1000 genomes]
rs1168018	0.95[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1168020	0.89[EUR][1000 genomes]
rs1168021	0.89[EUR][1000 genomes]
rs1168022	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs1168023	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs1168026	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs1168027	0.89[EUR][1000 genomes]
rs1168028	0.84[EUR][1000 genomes]
rs1168029	0.83[EUR][1000 genomes]
rs1168030	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs1168031	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs1168032	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs1168034	0.84[EUR][1000 genomes]
rs1168036	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1168040	0.91[CEU][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap]
rs1168041	0.82[CHD][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap]
rs1168042	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs1168044	0.89[EUR][1000 genomes]
rs1168045	0.95[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1168046	0.89[EUR][1000 genomes]
rs1168047	0.89[EUR][1000 genomes]
rs1168050	0.89[EUR][1000 genomes]
rs1168085	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1168086	0.95[CEU][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1168089	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1168093	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1168097	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1168098	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1168099	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1168102	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1168103	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1168107	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1168113	0.91[CEU][hapmap];0.90[CHD][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1168114	0.91[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1168124	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1168128	0.89[EUR][1000 genomes]
rs1168132	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1177541	0.80[EUR][1000 genomes]
rs1179765	0.89[EUR][1000 genomes]
rs1183260	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs1184547	0.89[EUR][1000 genomes]
rs1184865	0.95[CEU][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs12023489	0.86[EUR][1000 genomes]
rs12025714	0.89[ASN][1000 genomes]
rs12025800	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12029068	0.87[EUR][1000 genomes]
rs12030293	0.89[ASN][1000 genomes]
rs12037659	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12038768	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12039115	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12042319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12047226	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12048208	0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12062275	0.89[EUR][1000 genomes]
rs12074528	0.89[EUR][1000 genomes]
rs12090886	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12116574	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12124284	0.86[ASN][1000 genomes]
rs12136083	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12239736	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12239737	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12403207	0.89[EUR][1000 genomes]
rs1305520	0.83[EUR][1000 genomes]
rs1305521	0.88[EUR][1000 genomes]
rs1472257	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1627591	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1629122	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1690755	0.83[EUR][1000 genomes]
rs1690761	0.88[EUR][1000 genomes]
rs1690766	0.89[EUR][1000 genomes]
rs1748195	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1748197	0.95[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1748199	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1748200	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1748201	0.95[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1781195	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1781212	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1781221	0.95[CEU][hapmap]
rs1979722	0.95[CEU][hapmap];0.80[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2029763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2131925	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2131926	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2366636	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2366638	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2479464	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2489835	0.84[EUR][1000 genomes]
rs28399032	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34152715	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3850634	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3913007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4329540	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4344355	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4350231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4409689	0.82[AMR][1000 genomes]
rs4459145	0.87[EUR][1000 genomes]
rs4495740	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4587594	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4915838	0.85[EUR][1000 genomes]
rs4915840	0.89[EUR][1000 genomes]
rs56115463	0.85[ASN][1000 genomes]
rs583609	0.95[CEU][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs597076	0.88[EUR][1000 genomes]
rs597078	0.88[EUR][1000 genomes]
rs597470	0.88[EUR][1000 genomes]
rs598253	0.88[EUR][1000 genomes]
rs61471917	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61775910	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs624660	0.88[EUR][1000 genomes]
rs626787	0.87[EUR][1000 genomes]
rs630144	0.87[EUR][1000 genomes]
rs631106	0.87[EUR][1000 genomes]
rs634341	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs636497	0.88[EUR][1000 genomes]
rs636523	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs637723	0.91[CEU][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs638305	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs641540	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs642845	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs656297	0.95[CEU][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs6587976	0.88[EUR][1000 genomes]
rs6587980	0.95[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs659656	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6657050	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6666816	0.82[AMR][1000 genomes]
rs6675401	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6678483	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6682423	0.91[CEU][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes]
rs6690733	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6693353	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6696502	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs746735	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7518497	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7519785	0.96[EUR][1000 genomes]
rs7520810	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7527004	0.82[EUR][1000 genomes]
rs7531579	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7534572	0.89[EUR][1000 genomes]
rs7539035	0.95[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7547965	0.80[EUR][1000 genomes]
rs7548877	0.89[EUR][1000 genomes]
rs7555577	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs783291	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs880694	0.91[CEU][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes]
rs9436221	0.81[EUR][1000 genomes]
rs9436222	0.81[EUR][1000 genomes]
rs9436223	0.87[EUR][1000 genomes]
rs9436661	0.87[EUR][1000 genomes]
rs9787151	0.82[AMR][1000 genomes]
rs9787156	0.82[AMR][1000 genomes]
rs993013	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs995000	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9988450	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817371	chr1:62901935-63129697	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1014376	chr1:62976472-63181359	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv870559	chr1:63057136-63113719	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1000988	chr1:63061791-63107526	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1570694	DOCK7	cis	lesional skin	skin_eQTL
rs1570694	DOCK7	cis	lymphoblastoid	seeQTL
rs1570694	RAB11FIP2	trans	parietal	SCAN
rs1570694	DOCK7	cis	uninvolved skin	skin_eQTL
rs1570694	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63036800-63113600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:63066800-63112200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:63075600-63106600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:63079800-63108800	Weak transcription	Primary B cells from cord blood	blood
5	chr1:63082200-63121000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:63082800-63132600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:63083400-63119000	Weak transcription	Fetal Thymus	thymus
8	chr1:63084800-63121000	Weak transcription	Small Intestine	intestine
9	chr1:63085400-63113600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:63086400-63110600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:63087800-63106200	Weak transcription	Gastric	stomach
12	chr1:63087800-63106600	Weak transcription	Pancreas	Pancrea
13	chr1:63088000-63105200	Weak transcription	Fetal Heart	heart
14	chr1:63088000-63105400	Weak transcription	Hela-S3	cervix
15	chr1:63088000-63111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:63088000-63134600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr1:63089200-63105200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:63094000-63106400	Weak transcription	Brain Substantia Nigra	brain
19	chr1:63094600-63103600	Strong transcription	NHDF-Ad	bronchial
20	chr1:63094600-63106600	Weak transcription	Right Ventricle	heart
21	chr1:63095400-63106600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:63096200-63106800	Weak transcription	Thymus	Thymus
23	chr1:63096200-63121000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr1:63096400-63106200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:63096400-63106600	Weak transcription	Lung	lung
26	chr1:63096400-63106600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:63096400-63106800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:63096400-63106800	Weak transcription	NHEK	skin
29	chr1:63096400-63114000	Weak transcription	Spleen	Spleen
30	chr1:63096600-63106200	Weak transcription	Primary T cells from cord blood	blood
31	chr1:63096600-63108200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr1:63096800-63106600	Weak transcription	Aorta	Aorta
33	chr1:63096800-63106600	Weak transcription	Left Ventricle	heart
34	chr1:63096800-63129400	Weak transcription	Esophagus	oesophagus
35	chr1:63097000-63103600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr1:63097000-63113800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr1:63097200-63106600	Weak transcription	Ovary	ovary
38	chr1:63097800-63106400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:63097800-63115400	Weak transcription	Colonic Mucosa	Colon
40	chr1:63098000-63106200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr1:63098000-63121400	Weak transcription	HUVEC	blood vessel
42	chr1:63098400-63106400	Weak transcription	HSMMtube	muscle
43	chr1:63099400-63106200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr1:63099400-63106400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr1:63099400-63108600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr1:63099400-63110800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr1:63099600-63103400	Weak transcription	A549	lung
48	chr1:63099600-63106200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr1:63099600-63106200	Weak transcription	Fetal Lung	lung
50	chr1:63099600-63106200	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

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