Variant report

Variant	rs4459145
Chromosome Location	chr7:93303520-93303521
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10157265	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10159255	0.85[EUR][1000 genomes]
rs10789117	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10789118	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10789119	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10789120	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10889343	0.86[EUR][1000 genomes]
rs10889344	0.86[EUR][1000 genomes]
rs10889347	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10889348	0.85[EUR][1000 genomes]
rs10889349	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10889350	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10889352	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10889353	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10889354	0.89[EUR][1000 genomes]
rs10889356	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10889357	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11207990	0.86[EUR][1000 genomes]
rs11207992	0.85[EUR][1000 genomes]
rs11207994	0.86[EUR][1000 genomes]
rs11207995	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11207996	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11207997	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11207999	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11208000	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11208001	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11208004	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11485618	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1168085	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1168086	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168089	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168093	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168097	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1168098	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1168099	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1168102	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168103	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168114	0.81[EUR][1000 genomes]
rs1168124	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1168128	0.83[EUR][1000 genomes]
rs1168132	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12025800	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12038768	0.85[EUR][1000 genomes]
rs12042319	0.86[EUR][1000 genomes]
rs12047226	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12116574	0.85[EUR][1000 genomes]
rs12136083	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12239736	0.85[EUR][1000 genomes]
rs12239737	0.81[EUR][1000 genomes]
rs1472257	0.86[EUR][1000 genomes]
rs1570694	0.87[EUR][1000 genomes]
rs1629122	0.87[EUR][1000 genomes]
rs1748195	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1748197	0.88[EUR][1000 genomes]
rs1748199	0.88[EUR][1000 genomes]
rs1748200	0.87[EUR][1000 genomes]
rs1748201	0.87[EUR][1000 genomes]
rs2131925	0.86[EUR][1000 genomes]
rs2131926	0.86[EUR][1000 genomes]
rs2366636	0.88[EUR][1000 genomes]
rs2366638	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2479464	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28399032	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34152715	0.85[EUR][1000 genomes]
rs3850634	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4329540	0.86[EUR][1000 genomes]
rs4344355	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4495740	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4587594	0.89[EUR][1000 genomes]
rs61471917	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6587980	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6657050	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6675401	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6678483	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6690733	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6693353	0.83[EUR][1000 genomes]
rs6696502	0.86[EUR][1000 genomes]
rs746735	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7519785	0.85[EUR][1000 genomes]
rs7520810	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7531579	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7539035	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs993013	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs995000	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362449	chr7:92867465-93421315	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv888737	chr7:92970847-93379740	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4459145	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:93301400-93305800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:93303200-93306600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links