Variant report

Variant	rs11218126
Chromosome Location	chr11:120921866-120921867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:120921803-120922083	HepG2	liver:	n/a	n/a
2	JUN	chr11:120921829-120921973	HepG2	liver:	n/a	chr11:120921949-120921962
3	JUND	chr11:120921845-120922009	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TBCEL	TF binding region

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10502245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10892662	0.97[ASN][1000 genomes]
rs10892663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10892664	0.97[ASN][1000 genomes]
rs10892665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10892666	0.93[ASN][1000 genomes]
rs10892667	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10892668	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10892669	0.93[ASN][1000 genomes]
rs10892670	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11218115	0.93[ASN][1000 genomes]
rs11218118	0.97[ASN][1000 genomes]
rs11218120	0.97[ASN][1000 genomes]
rs11218121	0.97[ASN][1000 genomes]
rs11218122	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11218123	0.98[ASN][1000 genomes]
rs11218125	0.98[ASN][1000 genomes]
rs11218127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11218128	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11218135	0.92[ASN][1000 genomes]
rs11218137	0.92[ASN][1000 genomes]
rs11218139	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11218140	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12225989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12226639	0.93[ASN][1000 genomes]
rs12274032	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12274094	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12283211	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12576572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12576574	0.97[ASN][1000 genomes]
rs12576758	0.97[ASN][1000 genomes]
rs12576759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12577611	0.97[ASN][1000 genomes]
rs17124739	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17124764	0.93[ASN][1000 genomes]
rs1939004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2000525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2000526	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2000527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2000528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2186601	0.93[ASN][1000 genomes]
rs2298491	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs34929374	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3758891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3824976	0.93[ASN][1000 genomes]
rs4396299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4594010	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs56675723	0.93[ASN][1000 genomes]
rs57401958	0.92[ASN][1000 genomes]
rs57826163	0.94[ASN][1000 genomes]
rs58204590	0.92[ASN][1000 genomes]
rs61903185	0.97[ASN][1000 genomes]
rs6589854	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6589855	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6589856	0.93[ASN][1000 genomes]
rs67932968	0.94[ASN][1000 genomes]
rs68097814	0.97[ASN][1000 genomes]
rs7122879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7478744	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7927356	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7928550	0.91[ASN][1000 genomes]
rs7931603	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7940619	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7947565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7952619	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046688	chr11:120894391-120956305	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1039908	chr11:120904893-120936907	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120896000-120938600	Weak transcription	Lung	lung
2	chr11:120896200-120924200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:120896200-120959600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:120896400-120924400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:120896600-120924000	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:120896600-120938200	Weak transcription	Fetal Stomach	stomach
7	chr11:120898800-120938400	Weak transcription	Aorta	Aorta
8	chr11:120900800-120949800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:120901400-120924200	Weak transcription	Right Ventricle	heart
10	chr11:120905600-120924400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:120905800-120941600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:120906000-120924400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:120907200-120924200	Weak transcription	Pancreas	Pancrea
14	chr11:120909000-120956400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:120909800-120924400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:120910000-120924200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:120910000-120966600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:120910200-120938200	Weak transcription	Small Intestine	intestine
19	chr11:120910200-120939600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:120911200-120923800	Weak transcription	HUVEC	blood vessel
21	chr11:120911200-120924000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:120911200-120924000	Weak transcription	Brain Angular Gyrus	brain
23	chr11:120911200-120924000	Weak transcription	Psoas Muscle	Psoas
24	chr11:120911200-120924000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:120911200-120924200	Weak transcription	Brain Substantia Nigra	brain
26	chr11:120911200-120924200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:120911200-120939600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:120911200-120957400	Weak transcription	Thymus	Thymus
29	chr11:120911200-120961200	Weak transcription	Spleen	Spleen
30	chr11:120912000-120924400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr11:120912200-120924400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:120912600-120922400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:120912800-120924400	Weak transcription	NH-A	brain
34	chr11:120913200-120924000	Weak transcription	HepG2	liver
35	chr11:120913200-120924400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:120913600-120924400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:120914000-120948400	Weak transcription	Fetal Heart	heart
38	chr11:120914800-120922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:120915200-120924400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:120915400-120929400	Strong transcription	Primary hematopoietic stem cells	blood
41	chr11:120915400-120950200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:120915600-120931600	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:120915600-120941200	Strong transcription	Primary T cells from cord blood	blood
44	chr11:120915800-120935400	Strong transcription	Fetal Lung	lung
45	chr11:120915800-120940000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:120916000-120924400	Weak transcription	NHLF	lung
47	chr11:120916200-120924000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:120916200-120924400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:120916200-120925000	Weak transcription	NHDF-Ad	bronchial
50	chr11:120916200-120939400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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