Variant report

Variant	rs2298491
Chromosome Location	chr11:120959800-120959801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10502245	0.91[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10892662	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10892663	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10892664	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10892665	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10892666	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10892667	0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10892668	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10892669	0.98[ASN][1000 genomes]
rs10892670	0.99[ASN][1000 genomes]
rs11218115	0.88[ASN][1000 genomes]
rs11218118	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11218120	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11218121	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11218122	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11218123	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11218125	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11218126	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11218127	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11218128	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11218135	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11218137	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11218139	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11218140	0.96[ASN][1000 genomes]
rs12225989	0.91[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12226639	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274032	0.97[ASN][1000 genomes]
rs12274094	0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs12283211	0.89[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.89[ASN][1000 genomes]
rs12576572	0.91[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12576574	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12576758	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12576759	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12577611	0.91[ASN][1000 genomes]
rs17124739	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17124764	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939004	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.93[ASN][1000 genomes]
rs2000525	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2000526	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2000527	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2000528	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2186601	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34929374	0.81[ASN][1000 genomes]
rs3758891	0.91[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824976	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4396299	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[ASN][1000 genomes]
rs4594010	0.93[ASN][1000 genomes]
rs56675723	0.98[ASN][1000 genomes]
rs57401958	0.96[ASN][1000 genomes]
rs57826163	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58204590	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs61903185	0.91[ASN][1000 genomes]
rs6589854	0.98[ASN][1000 genomes]
rs6589855	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.99[ASN][1000 genomes]
rs6589856	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67932968	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68097814	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7122879	0.83[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];0.90[ASN][1000 genomes]
rs7478744	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7927356	0.98[ASN][1000 genomes]
rs7928550	0.84[ASN][1000 genomes]
rs7931603	0.98[ASN][1000 genomes]
rs7940619	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7947565	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7952619	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2298491	TBCEL	cis	cerebellum	SCAN
rs2298491	TBCEL	cis	lymphoblastoid	seeQTL

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120910000-120966600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:120911200-120961200	Weak transcription	Spleen	Spleen
3	chr11:120925200-120960000	Weak transcription	Right Ventricle	heart
4	chr11:120925200-120962400	Weak transcription	Psoas Muscle	Psoas
5	chr11:120926200-120966200	Weak transcription	NHEK	skin
6	chr11:120926400-120965800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:120935600-120961000	Weak transcription	NHDF-Ad	bronchial
8	chr11:120937400-120961600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:120939800-120962600	Weak transcription	Small Intestine	intestine
10	chr11:120940600-120960600	Weak transcription	Fetal Intestine Small	intestine
11	chr11:120942800-120962400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:120942800-120964600	Weak transcription	Lung	lung
13	chr11:120942800-120965800	Weak transcription	Esophagus	oesophagus
14	chr11:120942800-120972000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:120942800-120979000	Weak transcription	Aorta	Aorta
16	chr11:120943000-120961000	Weak transcription	Pancreas	Pancrea
17	chr11:120943000-120962400	Weak transcription	Gastric	stomach
18	chr11:120943000-120962600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:120943000-120964800	Weak transcription	Brain Angular Gyrus	brain
20	chr11:120945800-120962000	Weak transcription	GM12878-XiMat	blood
21	chr11:120946000-120963400	Weak transcription	Fetal Kidney	kidney
22	chr11:120946200-120970400	Weak transcription	NH-A	brain
23	chr11:120951000-120960400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:120953000-120961600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:120953600-120965800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:120954400-120959800	Strong transcription	Primary T cells from cord blood	blood
27	chr11:120954800-120960000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:120954800-120960000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:120956000-120971200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:120956200-120959800	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:120956400-120959800	Strong transcription	Primary hematopoietic stem cells	blood
32	chr11:120957000-120959800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:120957000-120960200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:120957000-120962200	Weak transcription	HepG2	liver
35	chr11:120957200-120959800	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr11:120957200-120959800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:120957600-120960200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr11:120957800-120959800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:120957800-120962000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:120958000-120960200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:120958200-120959800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:120958200-120959800	Weak transcription	Thymus	Thymus
43	chr11:120958200-120960000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:120958200-120960000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr11:120958200-120960200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:120958200-120960600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:120958200-120960600	Weak transcription	Fetal Intestine Large	intestine
48	chr11:120958200-120962600	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:120958200-120963200	Weak transcription	Placenta	Placenta
50	chr11:120958200-120963400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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