Variant report

Variant	rs3824976
Chromosome Location	chr11:120895352-120895353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10502245	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10892662	0.97[ASN][1000 genomes]
rs10892663	0.95[ASN][1000 genomes]
rs10892664	0.95[ASN][1000 genomes]
rs10892665	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10892666	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10892667	0.89[ASN][1000 genomes]
rs10892668	0.90[ASN][1000 genomes]
rs10892669	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10892670	0.87[ASN][1000 genomes]
rs11218115	0.93[ASN][1000 genomes]
rs11218118	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11218120	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11218121	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11218122	0.96[ASN][1000 genomes]
rs11218123	0.99[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11218125	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11218126	0.93[ASN][1000 genomes]
rs11218127	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11218128	0.91[ASN][1000 genomes]
rs11218135	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11218137	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11218139	0.88[ASN][1000 genomes]
rs11218140	0.84[ASN][1000 genomes]
rs12225989	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12226639	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12274032	0.90[ASN][1000 genomes]
rs12274094	0.87[ASN][1000 genomes]
rs12283211	0.95[ASN][1000 genomes]
rs12576572	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12576574	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12576758	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12576759	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12577611	0.97[ASN][1000 genomes]
rs17124739	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17124764	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1939004	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2000525	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2000526	0.96[ASN][1000 genomes]
rs2000527	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2000528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2186601	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2298491	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs34929374	0.86[ASN][1000 genomes]
rs3758891	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4396299	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4594010	0.86[ASN][1000 genomes]
rs56675723	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57401958	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57826163	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs58204590	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61903185	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6589854	0.88[ASN][1000 genomes]
rs6589855	0.87[ASN][1000 genomes]
rs6589856	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs67932968	0.89[ASN][1000 genomes]
rs68097814	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7122879	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7478744	0.88[ASN][1000 genomes]
rs7927356	0.88[ASN][1000 genomes]
rs7928550	0.91[ASN][1000 genomes]
rs7931603	0.88[ASN][1000 genomes]
rs7940619	0.88[ASN][1000 genomes]
rs7947565	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7952619	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046688	chr11:120894391-120956305	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120894200-120895400	Active TSS	Brain Substantia Nigra	brain
2	chr11:120894200-120895400	Active TSS	NH-A	brain
3	chr11:120894200-120895600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:120894200-120895600	Flanking Active TSS	Primary B cells from peripheral blood	blood
5	chr11:120894400-120895400	Active TSS	H1 Cell Line	embryonic stem cell
6	chr11:120894400-120895400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:120894400-120895400	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr11:120894400-120895400	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr11:120894400-120895400	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr11:120894400-120895400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:120894400-120895400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:120894400-120895400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr11:120894400-120895400	Active TSS	Muscle Satellite Cultured Cells	--
14	chr11:120894400-120895400	Active TSS	Aorta	Aorta
15	chr11:120894400-120895400	Active TSS	Brain Angular Gyrus	brain
16	chr11:120894400-120895400	Active TSS	Brain Germinal Matrix	brain
17	chr11:120894400-120895400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:120894400-120895400	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr11:120894400-120895400	Active TSS	Fetal Muscle Trunk	muscle
20	chr11:120894400-120895400	Active TSS	Left Ventricle	heart
21	chr11:120894400-120895400	Active TSS	Psoas Muscle	Psoas
22	chr11:120894400-120895400	Active TSS	K562	blood
23	chr11:120894400-120895600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:120894400-120895600	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr11:120894400-120895600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
26	chr11:120894400-120895600	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
27	chr11:120894400-120895600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:120894400-120895600	Active TSS	Fetal Kidney	kidney
29	chr11:120894400-120895600	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr11:120894400-120895600	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr11:120894400-120895600	Active TSS	A549	lung
32	chr11:120894400-120895600	Active TSS	NHLF	lung
33	chr11:120894400-120895800	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr11:120894400-120895800	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr11:120894400-120895800	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr11:120894400-120895800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr11:120894400-120895800	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr11:120894400-120895800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:120894400-120895800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:120894400-120896000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:120894400-120896000	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr11:120894400-120896200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:120894400-120896400	Active TSS	Right Atrium	heart
44	chr11:120894600-120895400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:120894600-120895400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:120894600-120895400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:120894600-120895400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:120894600-120895400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:120894600-120895400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:120894600-120895400	Active TSS	Primary T helper cells PMA-I stimulated	--

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