Variant report

Variant	rs12283211
Chromosome Location	chr11:120890823-120890824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10502245	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10892662	0.98[ASN][1000 genomes]
rs10892663	0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs10892664	0.97[ASN][1000 genomes]
rs10892665	0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10892666	0.90[ASN][1000 genomes]
rs10892667	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];0.91[ASN][1000 genomes]
rs10892668	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10892669	0.90[ASN][1000 genomes]
rs10892670	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11218115	0.95[ASN][1000 genomes]
rs11218118	0.98[ASN][1000 genomes]
rs11218120	0.98[ASN][1000 genomes]
rs11218121	0.98[ASN][1000 genomes]
rs11218122	0.89[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs11218123	0.98[ASN][1000 genomes]
rs11218125	0.95[ASN][1000 genomes]
rs11218126	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11218127	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs11218128	0.89[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs11218135	0.89[ASN][1000 genomes]
rs11218137	0.89[ASN][1000 genomes]
rs11218139	0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.90[ASN][1000 genomes]
rs11218140	0.87[ASN][1000 genomes]
rs12225989	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.91[ASN][1000 genomes]
rs12226639	0.89[ASN][1000 genomes]
rs12274032	0.91[ASN][1000 genomes]
rs12274094	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];0.89[ASN][1000 genomes]
rs12576572	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.96[ASN][1000 genomes]
rs12576574	0.98[ASN][1000 genomes]
rs12576758	0.98[ASN][1000 genomes]
rs12576759	0.94[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.98[ASN][1000 genomes]
rs12577611	0.98[ASN][1000 genomes]
rs17124739	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs17124764	0.89[ASN][1000 genomes]
rs1939004	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2000525	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.98[ASN][1000 genomes]
rs2000526	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.98[ASN][1000 genomes]
rs2000527	0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs2000528	0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs2186601	0.89[ASN][1000 genomes]
rs2298491	0.89[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.89[ASN][1000 genomes]
rs34929374	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3758891	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.93[ASN][1000 genomes]
rs3824976	0.95[ASN][1000 genomes]
rs4396299	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4594010	0.88[ASN][1000 genomes]
rs56675723	0.90[ASN][1000 genomes]
rs57401958	0.89[ASN][1000 genomes]
rs57826163	0.91[ASN][1000 genomes]
rs58204590	0.89[ASN][1000 genomes]
rs61903185	0.97[ASN][1000 genomes]
rs6589854	0.90[ASN][1000 genomes]
rs6589855	0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6589856	0.89[ASN][1000 genomes]
rs67932968	0.91[ASN][1000 genomes]
rs68097814	0.98[ASN][1000 genomes]
rs7122879	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs7478744	0.95[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7927356	0.90[ASN][1000 genomes]
rs7928550	0.94[ASN][1000 genomes]
rs7931603	0.90[ASN][1000 genomes]
rs7940619	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs7947565	0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7952619	0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12283211	TBCEL	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120890200-120891000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:120890200-120893800	Weak transcription	Fetal Lung	lung
3	chr11:120890400-120894400	Weak transcription	Esophagus	oesophagus

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