Variant report

Variant	rs11218139
Chromosome Location	chr11:120959225-120959226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10502245	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.96[ASN][1000 genomes]
rs10892662	0.90[ASN][1000 genomes]
rs10892663	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10892664	0.89[ASN][1000 genomes]
rs10892665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10892666	0.98[ASN][1000 genomes]
rs10892667	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs10892668	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10892669	0.98[ASN][1000 genomes]
rs10892670	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11218115	0.86[ASN][1000 genomes]
rs11218118	0.90[ASN][1000 genomes]
rs11218120	0.90[ASN][1000 genomes]
rs11218121	0.90[ASN][1000 genomes]
rs11218122	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11218123	0.90[ASN][1000 genomes]
rs11218125	0.93[ASN][1000 genomes]
rs11218126	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11218127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11218128	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11218135	0.96[ASN][1000 genomes]
rs11218137	0.99[ASN][1000 genomes]
rs11218140	0.96[ASN][1000 genomes]
rs12225989	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12226639	0.98[ASN][1000 genomes]
rs12274032	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12274094	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12283211	0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.90[ASN][1000 genomes]
rs12576572	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12576574	0.90[ASN][1000 genomes]
rs12576758	0.90[ASN][1000 genomes]
rs12576759	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12577611	0.90[ASN][1000 genomes]
rs17124739	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17124764	0.98[ASN][1000 genomes]
rs1939004	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.93[ASN][1000 genomes]
rs2000525	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2000526	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2000527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2000528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2186601	0.98[ASN][1000 genomes]
rs2298491	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs34929374	0.81[ASN][1000 genomes]
rs3758891	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3824976	0.88[ASN][1000 genomes]
rs4396299	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[ASN][1000 genomes]
rs4594010	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56675723	0.98[ASN][1000 genomes]
rs57401958	0.96[ASN][1000 genomes]
rs57826163	0.97[ASN][1000 genomes]
rs58204590	0.96[ASN][1000 genomes]
rs61903185	0.91[ASN][1000 genomes]
rs6589854	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589855	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6589856	0.98[ASN][1000 genomes]
rs67932968	0.97[ASN][1000 genomes]
rs68097814	0.90[ASN][1000 genomes]
rs7122879	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[ASN][1000 genomes]
rs7478744	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7927356	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928550	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7931603	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7952619	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11218139	TBCEL	cis	cerebellum	SCAN
rs11218139	OR10G8	cis	parietal	SCAN
rs11218139	MPZL2	cis	parietal	SCAN
rs11218139	CBL	cis	cerebellum	SCAN
rs11218139	TBCEL	cis	lymphoblastoid	seeQTL

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120896200-120959600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:120910000-120966600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:120911200-120961200	Weak transcription	Spleen	Spleen
4	chr11:120925200-120960000	Weak transcription	Right Ventricle	heart
5	chr11:120925200-120962400	Weak transcription	Psoas Muscle	Psoas
6	chr11:120926200-120966200	Weak transcription	NHEK	skin
7	chr11:120926400-120965800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:120927600-120959400	Weak transcription	Fetal Brain Male	brain
9	chr11:120933600-120959600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:120935600-120961000	Weak transcription	NHDF-Ad	bronchial
11	chr11:120937400-120961600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:120939800-120962600	Weak transcription	Small Intestine	intestine
13	chr11:120940600-120960600	Weak transcription	Fetal Intestine Small	intestine
14	chr11:120942800-120962400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:120942800-120964600	Weak transcription	Lung	lung
16	chr11:120942800-120965800	Weak transcription	Esophagus	oesophagus
17	chr11:120942800-120972000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:120942800-120979000	Weak transcription	Aorta	Aorta
19	chr11:120943000-120961000	Weak transcription	Pancreas	Pancrea
20	chr11:120943000-120962400	Weak transcription	Gastric	stomach
21	chr11:120943000-120962600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:120943000-120964800	Weak transcription	Brain Angular Gyrus	brain
23	chr11:120945800-120962000	Weak transcription	GM12878-XiMat	blood
24	chr11:120946000-120963400	Weak transcription	Fetal Kidney	kidney
25	chr11:120946200-120970400	Weak transcription	NH-A	brain
26	chr11:120951000-120960400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr11:120953000-120961600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:120953600-120965800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:120954400-120959800	Strong transcription	Primary T cells from cord blood	blood
30	chr11:120954800-120959400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:120954800-120960000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:120954800-120960000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:120956000-120959400	Strong transcription	Primary B cells from cord blood	blood
34	chr11:120956000-120971200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:120956200-120959800	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:120956400-120959800	Strong transcription	Primary hematopoietic stem cells	blood
37	chr11:120957000-120959800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:120957000-120960200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:120957000-120962200	Weak transcription	HepG2	liver
40	chr11:120957200-120959600	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:120957200-120959800	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:120957200-120959800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr11:120957600-120959400	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:120957600-120959400	Strong transcription	HSMM	muscle
45	chr11:120957600-120959600	Strong transcription	Brain Hippocampus Middle	brain
46	chr11:120957600-120960200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr11:120957800-120959600	Strong transcription	Adipose Nuclei	Adipose
48	chr11:120957800-120959600	Strong transcription	HSMMtube	muscle
49	chr11:120957800-120959800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr11:120957800-120962000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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