Variant report
| Variant | rs11226858 |
|---|---|
| Chromosome Location | chr11:105699677-105699678 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1002191 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10750733 | 0.85[EUR][1000 genomes] |
| rs10791773 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10895869 | 0.85[EUR][1000 genomes] |
| rs11226856 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11226857 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11226861 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12790131 | 0.83[EUR][1000 genomes] |
| rs1938956 | 0.83[EUR][1000 genomes] |
| rs1938957 | 0.85[EUR][1000 genomes] |
| rs1938958 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1938961 | 0.84[EUR][1000 genomes] |
| rs1954761 | 0.82[EUR][1000 genomes] |
| rs2000523 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2096714 | 0.84[EUR][1000 genomes] |
| rs2155040 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2155045 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4372412 | 0.83[AMR][1000 genomes] |
| rs495498 | 0.83[EUR][1000 genomes] |
| rs630880 | 0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs685374 | 0.83[EUR][1000 genomes] |
| rs7115736 | 0.84[EUR][1000 genomes] |
| rs7930116 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7934866 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898357 | chr11:105614894-105709856 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv832257 | chr11:105662753-105817576 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv1825856 | chr11:105672706-105775768 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv1825993 | chr11:105698982-105762601 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:105691400-105702000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
