Variant report

Variant	rs685374
Chromosome Location	chr11:105580112-105580113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1002191	0.82[EUR][1000 genomes]
rs10750733	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10791771	0.87[YRI][hapmap]
rs10791773	0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10895869	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226856	0.84[EUR][1000 genomes]
rs11226857	0.84[EUR][1000 genomes]
rs11226858	0.83[EUR][1000 genomes]
rs11226861	0.84[EUR][1000 genomes]
rs12363110	0.87[ASN][1000 genomes]
rs12790131	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1938956	0.88[EUR][1000 genomes]
rs1938957	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1938958	0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1938961	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1954761	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2000523	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2096714	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2155040	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2155045	0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs495498	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs630880	0.88[YRI][hapmap];0.87[EUR][1000 genomes]
rs7102567	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7115736	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7930116	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7934866	0.88[YRI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9667046	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105561400-105586200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105571600-105589000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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