Variant report

Variant	rs495498
Chromosome Location	chr11:105575774-105575775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:105575721-105575914	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000255403	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1002191	0.82[EUR][1000 genomes]
rs10750733	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10791771	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs10791773	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10895869	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11226856	0.84[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs11226857	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs11226858	0.83[EUR][1000 genomes]
rs11226861	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs12363110	0.88[ASN][1000 genomes]
rs12790131	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1938956	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1938957	0.96[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938958	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938961	0.96[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1954761	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2000523	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2096714	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2155040	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2155045	0.92[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs630880	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[EUR][1000 genomes]
rs685374	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7102567	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7115736	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7930116	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7934866	0.84[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9667046	0.90[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105561400-105586200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105568600-105576400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:105570400-105575800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105571200-105576400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:105571600-105576800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:105571600-105589000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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