Variant report

Variant	rs2000523
Chromosome Location	chr11:105632364-105632365
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1002191	0.87[EUR][1000 genomes]
rs10128540	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs10502062	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs10502063	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs10736648	0.81[CHB][hapmap]
rs10750733	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10791773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791774	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs10895869	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10895875	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs10895876	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs11226848	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs11226856	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11226857	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11226858	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11226861	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12790131	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1938956	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1938957	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938958	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938961	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1938966	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs1939148	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs1954761	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1954763	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs2096714	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2155040	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2155045	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2186598	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs4363555	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs4636626	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs495498	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs582570	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs618301	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs630567	0.87[CHB][hapmap]
rs630880	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs646007	0.81[CHB][hapmap]
rs658965	0.81[CHB][hapmap]
rs668120	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs682708	0.81[CHB][hapmap]
rs685374	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs685424	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs7102567	0.81[EUR][1000 genomes]
rs7115196	0.81[CHB][hapmap]
rs7115736	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7129691	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs748008	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs7930116	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7933863	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7934866	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7938716	0.87[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1829261	chr11:105614894-105698982	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv898357	chr11:105614894-105709856	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105626600-105634200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105628600-105637400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105629000-105637400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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