Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1002191	0.81[EUR][1000 genomes]
rs10750733	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10791773	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10895869	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11226856	0.84[EUR][1000 genomes]
rs11226857	0.84[EUR][1000 genomes]
rs11226858	0.83[EUR][1000 genomes]
rs11226861	0.84[EUR][1000 genomes]
rs12363110	0.92[ASN][1000 genomes]
rs1938956	0.88[EUR][1000 genomes]
rs1938957	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1938958	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1938961	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1954761	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2000523	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2096714	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2155040	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2155045	0.93[EUR][1000 genomes]
rs495498	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs630880	0.86[EUR][1000 genomes]
rs685374	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7102567	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7115736	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7930116	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7934866	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105561400-105568400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105561400-105586200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:105564800-105569400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:105564800-105569600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:105566600-105569600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:105567000-105568000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:105567000-105568000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: