Variant report

Variant	rs11226861
Chromosome Location	chr11:105705843-105705844
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1002191	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10750733	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[EUR][1000 genomes]
rs10791771	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap]
rs10791773	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10895869	0.86[EUR][1000 genomes]
rs11226856	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226857	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226858	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12790131	0.84[EUR][1000 genomes]
rs1938956	0.96[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs1938957	0.96[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes]
rs1938958	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1938961	0.96[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs1954761	0.83[EUR][1000 genomes]
rs2000523	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2096714	0.85[EUR][1000 genomes]
rs2155040	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[EUR][1000 genomes]
rs2155045	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs495498	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs630880	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs685374	0.84[EUR][1000 genomes]
rs7115736	0.96[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs7930116	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7934866	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898357	chr11:105614894-105709856	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105705400-105712800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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