Variant report

Variant	rs11231605
Chromosome Location	chr11:63613990-63613991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr11:63613969-63614132	HepG2	liver:	n/a	chr11:63614100-63614111

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63613491..63616107-chr11:63702849..63704991,2	MCF-7	breast:
2	chr11:63613512..63616432-chr11:63669939..63672564,2	MCF-7	breast:
3	chr11:63612869..63614930-chr11:63654118..63656036,2	MCF-7	breast:
4	chr11:63612581..63617250-chr11:63617280..63622514,6	MCF-7	breast:
5	chr11:63578410..63581843-chr11:63612969..63616771,3	MCF-7	breast:
6	chr11:63603344..63615182-chr11:63634321..63647771,46	MCF-7	breast:
7	chr11:63579371..63582235-chr11:63612121..63615192,3	K562	blood:
8	chr11:63610591..63619595-chr11:63634759..63639809,13	MCF-7	breast:
9	chr11:63605094..63609854-chr11:63611414..63617957,11	K562	blood:

No data

Variant related genes	Relation type
MARK2	TF binding region
ENSG00000168005	Chromatin interaction
ENSG00000072518	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10897457	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231615	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231619	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231620	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231621	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11231630	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231631	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850942	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886103	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886106	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886131	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886132	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886133	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61886134	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933791	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949291	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952270	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958333	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735314	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63608400-63618600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:63609200-63616600	Genic enhancers	Fetal Intestine Small	intestine
3	chr11:63609400-63615400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
4	chr11:63609400-63618400	Weak transcription	Ovary	ovary
5	chr11:63609600-63619200	Weak transcription	HSMMtube	muscle
6	chr11:63609600-63629600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:63610200-63614800	Weak transcription	Fetal Kidney	kidney
8	chr11:63610200-63633200	Weak transcription	Fetal Brain Male	brain
9	chr11:63610400-63616600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:63610800-63614800	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:63611000-63614400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:63611000-63620200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:63611600-63614400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:63611600-63614800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:63611800-63617400	Strong transcription	Fetal Stomach	stomach
16	chr11:63611800-63629800	Weak transcription	Aorta	Aorta
17	chr11:63612000-63617200	Enhancers	Pancreas	Pancrea
18	chr11:63612000-63618000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:63612600-63614000	Strong transcription	Fetal Muscle Leg	muscle
20	chr11:63612600-63616800	Enhancers	Placenta	Placenta
21	chr11:63612600-63618400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:63612800-63614000	Strong transcription	Dnd41	blood
23	chr11:63612800-63614800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:63613000-63614000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:63613000-63614200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr11:63613000-63614600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:63613000-63614600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:63613000-63614800	Strong transcription	Fetal Thymus	thymus
29	chr11:63613000-63615000	Weak transcription	Fetal Lung	lung
30	chr11:63613000-63615200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:63613000-63618400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:63613000-63618600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:63613000-63622600	Weak transcription	Brain Germinal Matrix	brain
34	chr11:63613200-63614400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:63613200-63614400	Weak transcription	Brain Substantia Nigra	brain
36	chr11:63613200-63614400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:63613200-63614600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:63613200-63614600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:63613200-63614600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:63613200-63614600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:63613200-63614600	Weak transcription	Adipose Nuclei	Adipose
42	chr11:63613200-63614600	Weak transcription	HepG2	liver
43	chr11:63613200-63614800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr11:63613200-63614800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr11:63613200-63615000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:63613200-63615000	Weak transcription	Small Intestine	intestine
47	chr11:63613200-63615200	Weak transcription	Colonic Mucosa	Colon
48	chr11:63613200-63616600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:63613200-63625600	Weak transcription	HUVEC	blood vessel
50	chr11:63613200-63626200	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links