Variant report

Variant	rs61886133
Chromosome Location	chr11:63650042-63650043
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63606304..63609239-chr11:63647374..63650317,2	MCF-7	breast:
2	chr11:63535711..63538179-chr11:63649382..63651942,2	K562	blood:

Variant related genes	Relation type
ENSG00000255651	Chromatin interaction
ENSG00000072518	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10897457	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11231605	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11231615	0.85[EUR][1000 genomes]
rs11231619	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11231620	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11231621	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11231630	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11231631	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3850942	0.92[EUR][1000 genomes]
rs61886103	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61886104	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61886106	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61886131	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61886132	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61886134	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7933791	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7949291	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7952270	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs958333	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9735314	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63637800-63653200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr11:63641000-63654800	Weak transcription	HepG2	liver
3	chr11:63642200-63654800	Weak transcription	Fetal Lung	lung
4	chr11:63642400-63654400	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:63642400-63655000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:63643600-63655800	Weak transcription	Aorta	Aorta
7	chr11:63643800-63652400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:63644000-63650400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:63644400-63650200	Weak transcription	GM12878-XiMat	blood
10	chr11:63644600-63655200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr11:63645000-63652400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr11:63645800-63654600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:63646200-63650800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:63646400-63652200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr11:63646600-63652000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr11:63646600-63652600	Enhancers	Fetal Thymus	thymus
17	chr11:63646800-63650200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:63646800-63651000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:63646800-63652200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:63646800-63652200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr11:63647000-63650200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:63647000-63650400	Weak transcription	Dnd41	blood
23	chr11:63647000-63651000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr11:63647000-63651400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:63647000-63651800	Enhancers	Thymus	Thymus
26	chr11:63647000-63652000	Enhancers	Primary T cells fromperipheralblood	blood
27	chr11:63647400-63652000	Enhancers	Primary hematopoietic stem cells	blood
28	chr11:63647600-63650200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:63647600-63650200	Weak transcription	Fetal Stomach	stomach
30	chr11:63647600-63650200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:63647600-63650400	Weak transcription	Pancreas	Pancrea
32	chr11:63647600-63651200	Strong transcription	Fetal Intestine Small	intestine
33	chr11:63647600-63651600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:63647600-63654200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:63647600-63654400	Weak transcription	Liver	Liver
36	chr11:63647800-63650200	Weak transcription	Fetal Intestine Large	intestine
37	chr11:63647800-63650200	Weak transcription	Placenta	Placenta
38	chr11:63647800-63650400	Weak transcription	Fetal Muscle Leg	muscle
39	chr11:63648000-63654200	Weak transcription	A549	lung
40	chr11:63648000-63654400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr11:63648200-63650200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr11:63648200-63650200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:63648200-63650200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:63648200-63650200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr11:63648200-63650200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr11:63648200-63650200	Weak transcription	Esophagus	oesophagus
47	chr11:63648200-63650200	Weak transcription	Lung	lung
48	chr11:63648200-63650400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:63648200-63652000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr11:63648200-63653800	Weak transcription	K562	blood

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