Variant report

Variant	rs11231615
Chromosome Location	chr11:63620859-63620860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63618627..63621390-chr11:63642478..63644559,2	MCF-7	breast:
2	chr11:63618262..63620872-chr11:63622247..63624300,2	MCF-7	breast:
3	chr11:63614156..63616576-chr11:63619519..63621542,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10897457	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231605	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231619	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231620	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231621	0.85[EUR][1000 genomes]
rs11231630	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231631	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850942	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886103	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886104	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886106	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886131	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886132	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886133	0.85[EUR][1000 genomes]
rs61886134	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933791	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949291	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952270	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958333	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735314	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63609600-63629600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:63610200-63633200	Weak transcription	Fetal Brain Male	brain
3	chr11:63611800-63629800	Weak transcription	Aorta	Aorta
4	chr11:63613000-63622600	Weak transcription	Brain Germinal Matrix	brain
5	chr11:63613200-63625600	Weak transcription	HUVEC	blood vessel
6	chr11:63613200-63626200	Weak transcription	NHLF	lung
7	chr11:63613200-63632400	Weak transcription	Fetal Brain Female	brain
8	chr11:63613200-63633000	Weak transcription	HSMM	muscle
9	chr11:63613800-63625400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:63614800-63621000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:63615800-63622400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:63615800-63625400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:63615800-63628200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:63615800-63633200	Weak transcription	HMEC	breast
15	chr11:63615800-63634800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:63615800-63636000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:63615800-63636000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:63615800-63636000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:63616400-63621600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:63616600-63621200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr11:63616800-63624800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:63617000-63621000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr11:63617000-63629600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:63617200-63629400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:63617600-63622600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:63618000-63623000	Enhancers	Adipose Nuclei	Adipose
27	chr11:63618400-63621200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:63618600-63621200	Enhancers	Primary T cells from cord blood	blood
29	chr11:63618600-63625800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:63618800-63623600	Weak transcription	Pancreas	Pancrea
31	chr11:63618800-63624000	Weak transcription	Gastric	stomach
32	chr11:63618800-63624800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:63618800-63624800	Weak transcription	Spleen	Spleen
34	chr11:63618800-63625600	Weak transcription	Left Ventricle	heart
35	chr11:63618800-63625800	Weak transcription	Colonic Mucosa	Colon
36	chr11:63618800-63626600	Weak transcription	Lung	lung
37	chr11:63618800-63629000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:63618800-63629000	Weak transcription	Fetal Muscle Leg	muscle
39	chr11:63619000-63621000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:63619000-63623600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:63619000-63632600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:63619200-63622000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:63619200-63624800	Weak transcription	Hela-S3	cervix
44	chr11:63619200-63626000	Weak transcription	Osteobl	bone
45	chr11:63619200-63628400	Weak transcription	NHEK	skin
46	chr11:63619200-63629200	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr11:63619200-63629200	Weak transcription	Thymus	Thymus
48	chr11:63619200-63638000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr11:63619400-63621400	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr11:63619400-63621400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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