Variant report

Variant	rs61886134
Chromosome Location	chr11:63652927-63652928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63644143..63645756-chr11:63650897..63653554,2	MCF-7	breast:
2	chr11:63651375..63653899-chr11:63656306..63658749,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10897457	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231605	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231615	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231619	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231620	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231621	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11231630	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231631	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850942	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886103	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886104	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886106	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886131	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886132	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886133	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7933791	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949291	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952270	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958333	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735314	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63637800-63653200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr11:63641000-63654800	Weak transcription	HepG2	liver
3	chr11:63642200-63654800	Weak transcription	Fetal Lung	lung
4	chr11:63642400-63654400	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:63642400-63655000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:63643600-63655800	Weak transcription	Aorta	Aorta
7	chr11:63644600-63655200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr11:63645800-63654600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:63647600-63654200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:63647600-63654400	Weak transcription	Liver	Liver
11	chr11:63648000-63654200	Weak transcription	A549	lung
12	chr11:63648000-63654400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:63648200-63653800	Weak transcription	K562	blood
14	chr11:63648200-63654400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:63648200-63654600	Weak transcription	HMEC	breast
16	chr11:63648200-63654800	Weak transcription	NHEK	skin
17	chr11:63648400-63654400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:63648400-63654400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:63648400-63654400	Weak transcription	Small Intestine	intestine
20	chr11:63648400-63654600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:63648400-63654600	Weak transcription	Osteobl	bone
22	chr11:63648400-63654800	Weak transcription	HSMM	muscle
23	chr11:63648400-63655000	Weak transcription	Hela-S3	cervix
24	chr11:63648400-63655000	Weak transcription	NH-A	brain
25	chr11:63648400-63655200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:63648600-63655000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:63649200-63654400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:63650400-63653000	Strong transcription	Fetal Muscle Leg	muscle
29	chr11:63650400-63653800	Strong transcription	Fetal Stomach	stomach
30	chr11:63650600-63654800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:63650600-63655600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:63650800-63653800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:63650800-63653800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:63650800-63654400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:63650800-63654400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:63650800-63654600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr11:63650800-63654600	Weak transcription	Gastric	stomach
38	chr11:63650800-63654800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:63650800-63654800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr11:63650800-63654800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:63650800-63654800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:63650800-63655000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr11:63650800-63656000	Weak transcription	Brain Germinal Matrix	brain
44	chr11:63650800-63657600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:63651000-63654400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr11:63651000-63654400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:63651000-63654400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:63651200-63653000	Enhancers	Fetal Intestine Large	intestine
49	chr11:63651200-63654800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:63651200-63655600	Genic enhancers	Fetal Intestine Small	intestine

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