Variant report

Variant	rs61886104
Chromosome Location	chr11:63607457-63607458
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63605709..63607776-chr11:63741979..63743642,3	K562	blood:
2	chr11:63535469..63537285-chr11:63604590..63607809,3	MCF-7	breast:
3	chr11:63597538..63602989-chr11:63603448..63608044,6	K562	blood:
4	chr11:63605131..63609420-chr11:63682910..63687369,4	MCF-7	breast:
5	chr11:63604963..63609785-chr11:63634052..63642181,26	MCF-7	breast:
6	chr11:63603311..63612666-chr11:63664740..63679491,25	MCF-7	breast:
7	chr11:63605255..63608067-chr11:63752037..63753673,2	MCF-7	breast:
8	chr11:63605595..63608737-chr11:63952425..63954944,4	MCF-7	breast:
9	chr11:63606304..63609239-chr11:63647374..63650317,2	MCF-7	breast:
10	chr11:63606175..63608969-chr11:63932687..63934753,2	MCF-7	breast:
11	chr11:63579552..63584409-chr11:63604789..63609677,6	K562	blood:
12	chr11:63607143..63610825-chr11:63931420..63934315,4	MCF-7	breast:
13	chr11:63605631..63608231-chr11:63683000..63685015,3	MCF-7	breast:
14	chr11:63603344..63615182-chr11:63634321..63647771,46	MCF-7	breast:
15	chr11:63437870..63440205-chr11:63606706..63609553,2	MCF-7	breast:
16	chr11:63605094..63609854-chr11:63611414..63617957,11	K562	blood:
17	chr11:63579552..63583589-chr11:63604564..63608557,6	K562	blood:
18	chr11:63536047..63538392-chr11:63603133..63607498,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000167770	Chromatin interaction
ENSG00000133315	Chromatin interaction
ENSG00000167771	Chromatin interaction
ENSG00000202089	Chromatin interaction
ENSG00000256100	Chromatin interaction
ENSG00000184743	Chromatin interaction
ENSG00000256280	Chromatin interaction
ENSG00000176340	Chromatin interaction
ENSG00000255651	Chromatin interaction
ENSG00000168005	Chromatin interaction
ENSG00000072518	Chromatin interaction
ENSG00000168439	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10897457	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231615	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231619	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231620	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231621	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11231630	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231631	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850942	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886103	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886106	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886131	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886132	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886133	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61886134	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933791	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949291	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952270	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958333	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735314	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63605800-63608400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:63605800-63608600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr11:63606000-63607600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr11:63606000-63607600	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr11:63606000-63607600	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr11:63606000-63607600	Active TSS	Primary T cells fromperipheralblood	blood
7	chr11:63606000-63607600	Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr11:63606000-63607600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
9	chr11:63606000-63607600	Active TSS	Muscle Satellite Cultured Cells	--
10	chr11:63606000-63607600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:63606000-63607600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:63606000-63607600	Active TSS	Brain Anterior Caudate	brain
13	chr11:63606000-63607600	Active TSS	Brain Cingulate Gyrus	brain
14	chr11:63606000-63607600	Active TSS	Colonic Mucosa	Colon
15	chr11:63606000-63607600	Active TSS	Right Ventricle	heart
16	chr11:63606000-63607800	Active TSS	H9 Cell Line	embryonic stem cell
17	chr11:63606000-63607800	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr11:63606000-63607800	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr11:63606000-63607800	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr11:63606000-63607800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:63606000-63607800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:63606000-63607800	Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr11:63606000-63607800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:63606000-63607800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:63606000-63607800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:63606000-63607800	Active TSS	Placenta Amnion	Placenta Amnion
27	chr11:63606000-63607800	Active TSS	A549	lung
28	chr11:63606000-63607800	Active TSS	HSMM	muscle
29	chr11:63606000-63608000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:63606000-63608000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:63606000-63608000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:63606000-63608000	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr11:63606000-63608000	Active TSS	Left Ventricle	heart
34	chr11:63606000-63608000	Active TSS	NHDF-Ad	bronchial
35	chr11:63606000-63608200	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr11:63606000-63608200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:63606000-63608200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:63606000-63608200	Active TSS	Thymus	Thymus
39	chr11:63606000-63608400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:63606000-63608400	Active TSS	Fetal Intestine Large	intestine
41	chr11:63606000-63608600	Active TSS	Fetal Intestine Small	intestine
42	chr11:63606000-63608800	Active TSS	GM12878-XiMat	blood
43	chr11:63606200-63607600	Active TSS	H1 Cell Line	embryonic stem cell
44	chr11:63606200-63607600	Active TSS	Colon Smooth Muscle	Colon
45	chr11:63606200-63607600	Active TSS	Fetal Stomach	stomach
46	chr11:63606200-63607600	Active TSS	Fetal Thymus	thymus
47	chr11:63606200-63607600	Active TSS	Spleen	Spleen
48	chr11:63606200-63607600	Active TSS	Dnd41	blood
49	chr11:63606200-63607600	Active TSS	Hela-S3	cervix
50	chr11:63606200-63607600	Active TSS	HMEC	breast

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