Variant report

Variant	rs7933791
Chromosome Location	chr11:63647409-63647410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63640265..63644644-chr11:63645471..63647891,3	MCF-7	breast:
2	chr11:63603344..63615182-chr11:63634321..63647771,46	MCF-7	breast:
3	chr11:63606304..63609239-chr11:63647374..63650317,2	MCF-7	breast:
4	chr11:63643541..63645532-chr11:63647100..63648960,2	K562	blood:
5	chr11:63646076..63648467-chr11:63649897..63652105,4	K562	blood:
6	chr11:63640055..63641967-chr11:63645955..63648336,2	K562	blood:
7	chr11:63637157..63639514-chr11:63645420..63648152,2	K562	blood:
8	chr11:63646755..63648414-chr11:63654081..63656532,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000072518	Chromatin interaction
ENSG00000202089	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10897457	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231605	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231615	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231619	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231620	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231621	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11231630	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231631	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850942	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886103	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886104	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886106	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886131	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886132	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886133	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61886134	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949291	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952270	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958333	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735314	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63637800-63653200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr11:63640000-63647800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:63641000-63654800	Weak transcription	HepG2	liver
4	chr11:63642200-63654800	Weak transcription	Fetal Lung	lung
5	chr11:63642400-63654400	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:63642400-63655000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:63642800-63648000	Enhancers	Brain Hippocampus Middle	brain
8	chr11:63643000-63648000	Enhancers	Brain Anterior Caudate	brain
9	chr11:63643600-63655800	Weak transcription	Aorta	Aorta
10	chr11:63643800-63652400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr11:63644000-63650400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:63644400-63648200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:63644400-63648800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:63644400-63650200	Weak transcription	GM12878-XiMat	blood
15	chr11:63644600-63655200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr11:63645000-63649400	Enhancers	Brain Cingulate Gyrus	brain
17	chr11:63645000-63652400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr11:63645200-63648200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:63645200-63648200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:63645200-63648400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:63645200-63649200	Enhancers	Brain Angular Gyrus	brain
22	chr11:63645400-63647600	Genic enhancers	Fetal Intestine Small	intestine
23	chr11:63645400-63649000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:63645400-63649000	Enhancers	Stomach Mucosa	stomach
25	chr11:63645800-63654600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:63646000-63648400	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr11:63646200-63648200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr11:63646200-63648200	Enhancers	HMEC	breast
29	chr11:63646200-63648400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:63646200-63648400	Strong transcription	Primary B cells from cord blood	blood
31	chr11:63646200-63648400	Genic enhancers	Primary T cells from cord blood	blood
32	chr11:63646200-63648400	Enhancers	NHDF-Ad	bronchial
33	chr11:63646200-63648400	Enhancers	Osteobl	bone
34	chr11:63646200-63650800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:63646400-63648000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr11:63646400-63648000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:63646400-63648200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:63646400-63652200	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr11:63646600-63647600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:63646600-63647800	Enhancers	Fetal Intestine Large	intestine
41	chr11:63646600-63652000	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr11:63646600-63652600	Enhancers	Fetal Thymus	thymus
43	chr11:63646800-63647600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:63646800-63647600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:63646800-63647600	Enhancers	Liver	Liver
46	chr11:63646800-63647800	Enhancers	Small Intestine	intestine
47	chr11:63646800-63648000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr11:63646800-63648000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:63646800-63648000	Enhancers	A549	lung
50	chr11:63646800-63648200	Enhancers	HUES6 Cell Line	embryonic stem cell

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