Variant report

Variant	rs11234704
Chromosome Location	chr11:86298607-86298608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86288370..86290389-chr11:86296721..86299519,2	MCF-7	breast:
2	chr11:86292598..86295203-chr11:86295582..86300821,4	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10219173	0.81[AMR][1000 genomes]
rs10219305	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10219319	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10219378	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10400291	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10792860	0.82[ASN][1000 genomes]
rs10792861	0.82[ASN][1000 genomes]
rs10792862	0.82[ASN][1000 genomes]
rs10792863	0.82[ASN][1000 genomes]
rs10792864	0.81[ASN][1000 genomes]
rs10792866	0.81[AMR][1000 genomes]
rs11535845	0.84[ASN][1000 genomes]
rs1540082	0.94[ASN][1000 genomes]
rs1945034	0.81[AMR][1000 genomes]
rs1945035	0.81[AMR][1000 genomes]
rs2051433	0.94[ASN][1000 genomes]
rs4144865	0.82[ASN][1000 genomes]
rs949349	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs949350	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1808984	chr11:86282680-86301717	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv555678	chr11:86285994-86305977	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86275400-86299400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:86276400-86299800	Weak transcription	Fetal Brain Male	brain
3	chr11:86286000-86299400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:86289800-86303200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:86289800-86303400	Weak transcription	Stomach Mucosa	stomach
6	chr11:86290600-86299400	Weak transcription	Psoas Muscle	Psoas
7	chr11:86290800-86299200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:86292000-86303800	Weak transcription	Ovary	ovary
9	chr11:86292200-86303200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:86292800-86303800	Weak transcription	Gastric	stomach
11	chr11:86293400-86303800	Weak transcription	Aorta	Aorta
12	chr11:86293800-86299200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:86293800-86299400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:86294000-86299400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:86294000-86299400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:86294200-86299400	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:86294200-86303800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:86294400-86299400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:86294400-86299600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:86294400-86303400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:86294600-86299200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:86294600-86299200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:86295600-86303400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:86297000-86299800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:86297400-86308000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:86298000-86300200	Enhancers	HUVEC	blood vessel
27	chr11:86298000-86301800	Weak transcription	Fetal Intestine Small	intestine
28	chr11:86298000-86302200	Weak transcription	Fetal Intestine Large	intestine
29	chr11:86298000-86307000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:86298200-86298800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:86298200-86300200	Enhancers	Placenta Amnion	Placenta Amnion
32	chr11:86298200-86304600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr11:86298200-86307400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:86298400-86298800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:86298400-86299000	Enhancers	A549	lung
36	chr11:86298400-86299600	Weak transcription	Esophagus	oesophagus
37	chr11:86298400-86301600	Weak transcription	Lung	lung
38	chr11:86298400-86303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:86298600-86299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:86298600-86299600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:86298600-86299600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:86298600-86299600	Weak transcription	Left Ventricle	heart
43	chr11:86298600-86299600	Weak transcription	Right Atrium	heart
44	chr11:86298600-86299600	Weak transcription	Right Ventricle	heart
45	chr11:86298600-86299600	Weak transcription	Spleen	Spleen
46	chr11:86298600-86300400	Enhancers	Adipose Nuclei	Adipose
47	chr11:86298600-86300600	Enhancers	Stomach Smooth Muscle	stomach
48	chr11:86298600-86300800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:86298600-86300800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr11:86298600-86302400	Weak transcription	HMEC	breast

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