The 2.0 version of rSNPBase

Variant report

Variant rs10219378
Chromosome Location chr11:86339724-86339725
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:86321800-86343200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr11:86330800-86341600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr11:86331000-86343600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr11:86331000-86346200 Weak transcription Primary hematopoietic stem cells blood
5 chr11:86332800-86343200 Weak transcription A549 lung
6 chr11:86333000-86342400 Enhancers Skeletal Muscle Female skeletal muscle
7 chr11:86333200-86349800 Weak transcription Esophagus oesophagus
8 chr11:86334000-86342200 Enhancers Ovary ovary
9 chr11:86335000-86341000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr11:86335000-86343200 Weak transcription NH-A brain
11 chr11:86335000-86343600 Weak transcription Lung lung
12 chr11:86335200-86341800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr11:86335200-86342800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr11:86335600-86345200 Enhancers NHDF-Ad bronchial
15 chr11:86335800-86341000 Enhancers Adipose Nuclei Adipose
16 chr11:86336000-86343200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr11:86336000-86343400 Weak transcription Placenta Amnion Placenta Amnion
18 chr11:86336000-86348000 Weak transcription Fetal Intestine Small intestine
19 chr11:86336600-86340000 Weak transcription Pancreas Pancrea
20 chr11:86336600-86342800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr11:86337000-86344600 Enhancers Breast Myoepithelial Primary Cells Breast
22 chr11:86337600-86343200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr11:86337600-86343200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr11:86337600-86343200 Weak transcription NHEK skin
25 chr11:86338000-86342400 Enhancers Colon Smooth Muscle Colon
26 chr11:86338200-86343600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
27 chr11:86338400-86342200 Enhancers Aorta Aorta
28 chr11:86338600-86341000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr11:86338600-86341000 Enhancers Muscle Satellite Cultured Cells --
30 chr11:86338600-86342200 Enhancers Duodenum Smooth Muscle Duodenum
31 chr11:86338600-86342200 Enhancers Left Ventricle heart
32 chr11:86338600-86342200 Enhancers Psoas Muscle Psoas
33 chr11:86338600-86342200 Enhancers Right Atrium heart
34 chr11:86338600-86342600 Enhancers Rectal Smooth Muscle rectum
35 chr11:86338600-86342600 Enhancers NHLF lung
36 chr11:86338600-86342600 Enhancers Osteobl bone
37 chr11:86338800-86341000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
38 chr11:86338800-86341000 Enhancers HSMMtube muscle
39 chr11:86338800-86341600 Enhancers Brain Anterior Caudate brain
40 chr11:86338800-86342400 Enhancers Fetal Muscle Leg muscle
41 chr11:86338800-86342400 Enhancers Skeletal Muscle Male skeletal muscle
42 chr11:86339000-86342000 Enhancers Fetal Heart heart
43 chr11:86339200-86340800 Weak transcription Brain Angular Gyrus brain
44 chr11:86339200-86341200 Enhancers Fetal Adrenal Gland Adrenal Gland
45 chr11:86339200-86342200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
46 chr11:86339200-86349200 Weak transcription Brain Inferior Temporal Lobe brain
47 chr11:86339400-86339800 Weak transcription Fetal Brain Female brain
48 chr11:86339400-86340000 Weak transcription Fetal Lung lung
49 chr11:86339400-86340200 Enhancers HSMM muscle
50 chr11:86339400-86340800 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015