Variant report

Variant	rs10898510
Chromosome Location	chr11:86313728-86313729
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86313579..86315805-chr11:86518203..86520987,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10219173	0.93[ASN][1000 genomes]
rs10219305	0.94[ASN][1000 genomes]
rs10219319	0.94[ASN][1000 genomes]
rs10219378	0.95[ASN][1000 genomes]
rs10400291	0.93[ASN][1000 genomes]
rs10792860	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10792861	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10792862	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10792863	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10792864	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10792866	0.95[ASN][1000 genomes]
rs10898505	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898506	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10898507	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10898511	0.88[ASN][1000 genomes]
rs10898512	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898514	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10898515	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10898516	0.87[ASN][1000 genomes]
rs11234717	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11535845	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12289252	0.96[ASN][1000 genomes]
rs12290684	0.96[ASN][1000 genomes]
rs1540081	0.93[ASN][1000 genomes]
rs1540082	0.82[ASN][1000 genomes]
rs17211577	0.91[ASN][1000 genomes]
rs1938924	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1938925	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1938926	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1938927	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1938928	0.93[ASN][1000 genomes]
rs1938938	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2032356	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2051433	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2155035	0.93[ASN][1000 genomes]
rs2840368	0.91[ASN][1000 genomes]
rs4144865	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944601	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944604	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4944610	0.97[ASN][1000 genomes]
rs4944613	0.89[ASN][1000 genomes]
rs722157	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs722158	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7940587	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7940590	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7940772	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7940781	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7940788	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs949350	0.95[ASN][1000 genomes]
rs9634021	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9667152	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86300200-86318800	Weak transcription	Esophagus	oesophagus
2	chr11:86307000-86317800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86308400-86317000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:86308800-86321600	Weak transcription	Left Ventricle	heart
5	chr11:86309400-86321600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:86309800-86317000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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