Variant report

Variant	rs10792860
Chromosome Location	chr11:86308532-86308533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10219173	0.91[ASN][1000 genomes]
rs10219305	0.93[ASN][1000 genomes]
rs10219319	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10219378	0.93[ASN][1000 genomes]
rs10400291	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.97[ASN][1000 genomes]
rs10792861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792862	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10792863	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10792864	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10792866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10898505	0.93[ASN][1000 genomes]
rs10898506	0.86[ASN][1000 genomes]
rs10898507	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898510	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10898511	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10898512	1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.80[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10898514	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898515	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10898516	0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11234704	0.82[ASN][1000 genomes]
rs11234717	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11535845	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12289252	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12290684	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1540081	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1540082	0.88[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs17211577	0.87[CEU][hapmap];0.94[CHB][hapmap];0.81[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1894012	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs1938924	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1938925	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1938926	0.92[ASN][1000 genomes]
rs1938927	0.94[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1938928	0.89[ASW][hapmap];0.87[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.88[TSI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1938938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1945146	0.82[MEX][hapmap]
rs2032356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051433	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2155035	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2840368	0.87[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4144865	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4944601	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4944604	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944610	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944613	0.94[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs722157	0.89[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs722158	0.89[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7940587	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7940590	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7940772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs949350	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9634021	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86300200-86318800	Weak transcription	Esophagus	oesophagus
2	chr11:86300800-86308800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr11:86302200-86309000	Enhancers	HUVEC	blood vessel
4	chr11:86304400-86309000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:86306600-86308600	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr11:86306800-86308800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:86306800-86309000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:86307000-86317800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:86307600-86308600	Enhancers	Brain Substantia Nigra	brain
10	chr11:86307600-86308600	Enhancers	Right Atrium	heart
11	chr11:86307600-86309000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr11:86307600-86309000	Enhancers	Stomach Smooth Muscle	stomach
13	chr11:86307800-86308800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:86307800-86308800	Enhancers	Ovary	ovary
15	chr11:86308000-86308600	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:86308000-86308600	Enhancers	Fetal Heart	heart
17	chr11:86308000-86308600	Enhancers	Pancreas	Pancrea
18	chr11:86308000-86308600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr11:86308000-86308600	Enhancers	Psoas Muscle	Psoas
20	chr11:86308000-86308600	Enhancers	NH-A	brain
21	chr11:86308000-86308800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:86308000-86308800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:86308000-86308800	Enhancers	Aorta	Aorta
24	chr11:86308000-86308800	Enhancers	Brain Hippocampus Middle	brain
25	chr11:86308000-86308800	Enhancers	Fetal Muscle Leg	muscle
26	chr11:86308000-86308800	Enhancers	Left Ventricle	heart
27	chr11:86308000-86308800	Enhancers	Right Ventricle	heart
28	chr11:86308000-86309200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr11:86308200-86308600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:86308200-86308600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:86308200-86308600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:86308200-86308600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:86308200-86308600	Enhancers	Brain Angular Gyrus	brain
34	chr11:86308200-86308600	Enhancers	Fetal Brain Female	brain
35	chr11:86308200-86308600	ZNF genes & repeats	Fetal Intestine Small	intestine
36	chr11:86308200-86308800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr11:86308200-86308800	Enhancers	Colon Smooth Muscle	Colon
38	chr11:86308200-86308800	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr11:86308200-86309200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:86308400-86308600	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr11:86308400-86308600	Enhancers	Brain Anterior Caudate	brain
42	chr11:86308400-86309000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:86308400-86317000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links