Variant report

Variant	rs4144865
Chromosome Location	chr11:86307679-86307680
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10219173	0.91[ASN][1000 genomes]
rs10219305	0.93[ASN][1000 genomes]
rs10219319	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10219378	0.93[ASN][1000 genomes]
rs10400291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10792860	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10792861	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10792862	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792863	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792864	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10898505	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898506	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898507	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10898510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10898511	0.83[ASN][1000 genomes]
rs10898512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898514	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10898515	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10898516	0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs11234704	0.82[ASN][1000 genomes]
rs11234717	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11535845	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12289252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12290684	0.94[ASN][1000 genomes]
rs1540081	0.92[ASN][1000 genomes]
rs1540082	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs17211577	0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1894012	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1938924	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1938925	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1938926	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1938927	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1938928	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1938938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2032356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2051433	0.88[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2155035	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2840368	0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs4944601	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944604	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4944610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4944613	0.94[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs722157	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs722158	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7940587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940590	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7940781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7940788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs949350	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9634021	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9667152	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3463753	chr11:86302304-86308102	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86297400-86308000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:86300200-86308200	Weak transcription	Fetal Brain Male	brain
3	chr11:86300200-86318800	Weak transcription	Esophagus	oesophagus
4	chr11:86300800-86308800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr11:86302200-86309000	Enhancers	HUVEC	blood vessel
6	chr11:86304200-86308000	Weak transcription	Aorta	Aorta
7	chr11:86304200-86308000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:86304200-86308200	Weak transcription	Fetal Stomach	stomach
9	chr11:86304400-86307800	Weak transcription	Adipose Nuclei	Adipose
10	chr11:86304400-86307800	Weak transcription	Ovary	ovary
11	chr11:86304400-86308000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:86304400-86308000	Weak transcription	Right Ventricle	heart
13	chr11:86304400-86308200	Weak transcription	Fetal Lung	lung
14	chr11:86304400-86308400	Weak transcription	Brain Anterior Caudate	brain
15	chr11:86304400-86309000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:86304600-86307800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:86304600-86307800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:86304600-86308000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:86304600-86308000	Weak transcription	Fetal Heart	heart
20	chr11:86304600-86308000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:86304600-86308000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:86304600-86308200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:86304600-86308200	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:86304600-86308200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:86304800-86308000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:86306600-86308200	Enhancers	Fetal Intestine Large	intestine
27	chr11:86306600-86308200	Weak transcription	NHLF	lung
28	chr11:86306600-86308600	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr11:86306800-86308000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:86306800-86308200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:86306800-86308200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:86306800-86308200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:86306800-86308800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:86306800-86309000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:86307000-86308000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:86307000-86308000	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:86307000-86308000	Weak transcription	Left Ventricle	heart
38	chr11:86307000-86308000	Weak transcription	Lung	lung
39	chr11:86307000-86308000	Weak transcription	Pancreas	Pancrea
40	chr11:86307000-86308000	Weak transcription	Psoas Muscle	Psoas
41	chr11:86307000-86308000	Weak transcription	Spleen	Spleen
42	chr11:86307000-86308000	Weak transcription	NH-A	brain
43	chr11:86307000-86308200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:86307000-86308200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:86307000-86317800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:86307400-86307800	Weak transcription	Fetal Intestine Small	intestine
47	chr11:86307400-86308200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:86307400-86308200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr11:86307600-86308200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:86307600-86308600	Enhancers	Brain Substantia Nigra	brain

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