The 2.0 version of rSNPBase

Variant report

Variant rs10219173
Chromosome Location chr11:86342460-86342461
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:86321800-86343200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr11:86331000-86343600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr11:86331000-86346200 Weak transcription Primary hematopoietic stem cells blood
4 chr11:86332800-86343200 Weak transcription A549 lung
5 chr11:86333200-86349800 Weak transcription Esophagus oesophagus
6 chr11:86335000-86343200 Weak transcription NH-A brain
7 chr11:86335000-86343600 Weak transcription Lung lung
8 chr11:86335200-86342800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr11:86335600-86345200 Enhancers NHDF-Ad bronchial
10 chr11:86336000-86343200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr11:86336000-86343400 Weak transcription Placenta Amnion Placenta Amnion
12 chr11:86336000-86348000 Weak transcription Fetal Intestine Small intestine
13 chr11:86336600-86342800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr11:86337000-86344600 Enhancers Breast Myoepithelial Primary Cells Breast
15 chr11:86337600-86343200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr11:86337600-86343200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr11:86337600-86343200 Weak transcription NHEK skin
18 chr11:86338200-86343600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
19 chr11:86338600-86342600 Enhancers Rectal Smooth Muscle rectum
20 chr11:86338600-86342600 Enhancers NHLF lung
21 chr11:86338600-86342600 Enhancers Osteobl bone
22 chr11:86339200-86349200 Weak transcription Brain Inferior Temporal Lobe brain
23 chr11:86340000-86357200 Weak transcription Fetal Brain Female brain
24 chr11:86340800-86343200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr11:86340800-86343200 Weak transcription HSMM muscle
26 chr11:86341000-86343200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr11:86341000-86343200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr11:86341000-86343200 Weak transcription Muscle Satellite Cultured Cells --
29 chr11:86341000-86343400 Weak transcription HSMMtube muscle
30 chr11:86341000-86343600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr11:86341000-86347400 Weak transcription Fetal Kidney kidney
32 chr11:86341000-86349000 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr11:86341000-86355400 Weak transcription Adipose Nuclei Adipose
34 chr11:86341200-86343200 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr11:86341600-86358800 Weak transcription Brain Anterior Caudate brain
36 chr11:86342000-86342600 Enhancers Stomach Smooth Muscle stomach
37 chr11:86342000-86343600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr11:86342000-86344600 Weak transcription Pancreas Pancrea
39 chr11:86342000-86349200 Weak transcription Fetal Heart heart
40 chr11:86342200-86343200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr11:86342200-86343200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
42 chr11:86342200-86343200 Weak transcription Ovary ovary
43 chr11:86342200-86343800 Weak transcription Duodenum Smooth Muscle Duodenum
44 chr11:86342200-86343800 Weak transcription Fetal Muscle Trunk muscle
45 chr11:86342200-86348400 Weak transcription Left Ventricle heart
46 chr11:86342200-86348400 Weak transcription Right Ventricle heart
47 chr11:86342200-86348800 Weak transcription Brain Angular Gyrus brain
48 chr11:86342200-86351400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr11:86342200-86353200 Weak transcription Aorta Aorta
50 chr11:86342200-86356400 Weak transcription Fetal Stomach stomach

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Last update: Aug 31, 2015