Variant report

Variant	rs2155035
Chromosome Location	chr11:86343603-86343604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86336049..86341479-chr11:86341893..86346875,7	MCF-7	breast:
2	chr11:86165887..86167902-chr11:86340779..86343642,2	MCF-7	breast:
3	chr11:86340979..86344434-chr11:86510091..86513314,6	MCF-7	breast:
4	chr11:86342318..86349364-chr11:86509780..86514935,13	MCF-7	breast:
5	chr11:86319092..86320819-chr11:86342612..86344114,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10219173	0.96[ASN][1000 genomes]
rs10219305	0.98[ASN][1000 genomes]
rs10219319	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10219378	0.97[ASN][1000 genomes]
rs10400291	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10792860	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792861	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792862	0.92[ASN][1000 genomes]
rs10792863	0.92[ASN][1000 genomes]
rs10792864	0.90[ASN][1000 genomes]
rs10792866	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10898505	0.86[ASN][1000 genomes]
rs10898507	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898510	0.93[ASN][1000 genomes]
rs10898511	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10898512	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10898514	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898515	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11234717	0.96[ASN][1000 genomes]
rs11535845	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12289252	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12290684	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1540081	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540082	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs17211577	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1894012	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1938924	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1938925	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1938926	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1938927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1938928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938938	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2032356	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051433	0.87[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2840368	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4144865	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4944601	0.85[ASN][1000 genomes]
rs4944604	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944610	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944613	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs722157	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs722158	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7940587	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7940590	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7940772	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940781	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940788	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs949350	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9634021	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86331000-86346200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:86333200-86349800	Weak transcription	Esophagus	oesophagus
3	chr11:86335600-86345200	Enhancers	NHDF-Ad	bronchial
4	chr11:86336000-86348000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:86337000-86344600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:86339200-86349200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:86340000-86357200	Weak transcription	Fetal Brain Female	brain
8	chr11:86341000-86347400	Weak transcription	Fetal Kidney	kidney
9	chr11:86341000-86349000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:86341000-86355400	Weak transcription	Adipose Nuclei	Adipose
11	chr11:86341600-86358800	Weak transcription	Brain Anterior Caudate	brain
12	chr11:86342000-86344600	Weak transcription	Pancreas	Pancrea
13	chr11:86342000-86349200	Weak transcription	Fetal Heart	heart
14	chr11:86342200-86343800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:86342200-86343800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:86342200-86348400	Weak transcription	Left Ventricle	heart
17	chr11:86342200-86348400	Weak transcription	Right Ventricle	heart
18	chr11:86342200-86348800	Weak transcription	Brain Angular Gyrus	brain
19	chr11:86342200-86351400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:86342200-86353200	Weak transcription	Aorta	Aorta
21	chr11:86342200-86356400	Weak transcription	Fetal Stomach	stomach
22	chr11:86342400-86344000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:86342600-86347400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:86342800-86344000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:86343000-86344800	Enhancers	NHLF	lung
26	chr11:86343000-86344800	Enhancers	Osteobl	bone
27	chr11:86343200-86343800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:86343200-86344200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:86343200-86344200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:86343200-86344400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr11:86343200-86344400	Enhancers	Ovary	ovary
32	chr11:86343200-86344800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:86343200-86344800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:86343200-86344800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:86343200-86344800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:86343200-86344800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:86343200-86344800	Enhancers	HMEC	breast
38	chr11:86343200-86344800	Enhancers	NH-A	brain
39	chr11:86343200-86344800	Enhancers	NHEK	skin
40	chr11:86343200-86345000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:86343200-86345000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:86343200-86345000	Enhancers	HUVEC	blood vessel
43	chr11:86343200-86345200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:86343200-86345200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:86343200-86345200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr11:86343200-86345400	Enhancers	HSMM	muscle
47	chr11:86343400-86343800	Enhancers	Colon Smooth Muscle	Colon
48	chr11:86343400-86344600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr11:86343400-86344600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr11:86343400-86344600	Enhancers	Placenta Amnion	Placenta Amnion

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