Variant report

Variant	rs10792862
Chromosome Location	chr11:86308836-86308837
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10219173	0.91[ASN][1000 genomes]
rs10219305	0.93[ASN][1000 genomes]
rs10219319	0.93[ASN][1000 genomes]
rs10219378	0.93[ASN][1000 genomes]
rs10400291	0.97[ASN][1000 genomes]
rs10792860	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10792861	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10792863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792864	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792866	0.93[ASN][1000 genomes]
rs10898505	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898506	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898507	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10898510	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10898511	0.83[ASN][1000 genomes]
rs10898512	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898514	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10898515	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10898516	0.86[ASN][1000 genomes]
rs11234704	0.82[ASN][1000 genomes]
rs11234717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11535845	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12289252	0.95[ASN][1000 genomes]
rs12290684	0.94[ASN][1000 genomes]
rs1540081	0.92[ASN][1000 genomes]
rs1540082	0.86[ASN][1000 genomes]
rs17211577	0.89[ASN][1000 genomes]
rs1938924	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1938925	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1938926	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1938927	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1938928	0.92[ASN][1000 genomes]
rs1938938	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2032356	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2051433	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2155035	0.92[ASN][1000 genomes]
rs2840368	0.89[ASN][1000 genomes]
rs4144865	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944601	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944604	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4944610	0.96[ASN][1000 genomes]
rs4944613	0.88[ASN][1000 genomes]
rs722157	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs722158	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7940587	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940590	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940772	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7940781	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7940788	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs949350	0.93[ASN][1000 genomes]
rs9634021	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9667152	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86300200-86318800	Weak transcription	Esophagus	oesophagus
2	chr11:86302200-86309000	Enhancers	HUVEC	blood vessel
3	chr11:86304400-86309000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:86306800-86309000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:86307000-86317800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:86307600-86309000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr11:86307600-86309000	Enhancers	Stomach Smooth Muscle	stomach
8	chr11:86308000-86309200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr11:86308200-86309200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:86308400-86309000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:86308400-86317000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:86308600-86309000	Enhancers	Adipose Nuclei	Adipose
13	chr11:86308800-86309600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr11:86308800-86312400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:86308800-86321600	Weak transcription	Left Ventricle	heart

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