Variant report

Variant	rs11236998
Chromosome Location	chr11:76596620-76596621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76589259..76594319-chr11:76594375..76597677,6	K562	blood:
2	chr11:76595561..76597799-chr11:76599366..76601311,2	K562	blood:
3	chr11:76570485..76573468-chr11:76594453..76596936,2	MCF-7	breast:
4	chr11:76571826..76573496-chr11:76592749..76596697,3	K562	blood:
5	chr11:76589259..76593591-chr11:76594375..76597317,5	K562	blood:
6	chr11:76459642..76462413-chr11:76595448..76597077,2	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction
ENSG00000212030	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10899309	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236978	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11236995	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11237001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11237005	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11237012	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11237046	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs11827049	1.00[GIH][hapmap];0.92[TSI][hapmap]
rs12785994	0.84[ASW][hapmap];0.88[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs12790535	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12791896	0.80[EUR][1000 genomes]
rs12791998	1.00[CEU][hapmap]
rs12792209	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12792893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12793219	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12795242	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12797385	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12797610	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs12806029	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34683571	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7944465	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76573200-76600400	Weak transcription	Primary T cells from cord blood	blood
2	chr11:76573200-76601400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:76574200-76599800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:76580000-76596800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:76581000-76602200	Weak transcription	Primary B cells from cord blood	blood
6	chr11:76581200-76613400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:76581600-76600000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:76581800-76600200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:76587800-76599600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:76592000-76599800	Weak transcription	Fetal Heart	heart
11	chr11:76593800-76597400	Enhancers	Brain Hippocampus Middle	brain
12	chr11:76594600-76597000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr11:76594800-76597000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr11:76594800-76597000	Enhancers	Brain Anterior Caudate	brain
15	chr11:76594800-76597600	Enhancers	NHEK	skin
16	chr11:76594800-76602600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:76595000-76596800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:76595000-76597400	Enhancers	Brain Substantia Nigra	brain
19	chr11:76595200-76597000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr11:76595400-76597000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:76595400-76597800	Enhancers	HMEC	breast
22	chr11:76595400-76602800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:76595600-76597400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:76595600-76599000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:76595800-76596800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:76596000-76596800	Enhancers	Osteobl	bone
27	chr11:76596000-76597000	Enhancers	NHDF-Ad	bronchial
28	chr11:76596000-76597400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:76596000-76597600	Enhancers	NH-A	brain
30	chr11:76596200-76596800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:76596200-76597000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr11:76596200-76597000	Enhancers	Brain Cingulate Gyrus	brain
33	chr11:76596200-76597000	Flanking Active TSS	HUVEC	blood vessel
34	chr11:76596200-76597400	Enhancers	Adipose Nuclei	Adipose
35	chr11:76596400-76596800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:76596400-76596800	Enhancers	Primary T cells fromperipheralblood	blood
37	chr11:76596400-76596800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:76596400-76596800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:76596400-76596800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:76596400-76596800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:76596400-76596800	Enhancers	Placenta	Placenta
42	chr11:76596400-76596800	Enhancers	Psoas Muscle	Psoas
43	chr11:76596400-76596800	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr11:76596400-76596800	Enhancers	HSMM	muscle
45	chr11:76596400-76596800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr11:76596400-76597000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:76596400-76597000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:76596400-76597000	Enhancers	Liver	Liver
49	chr11:76596400-76597000	Enhancers	Brain Angular Gyrus	brain
50	chr11:76596400-76597000	Enhancers	Small Intestine	intestine

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