Variant report

Variant	rs12790535
Chromosome Location	chr11:76626583-76626584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10899309	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11236959	0.88[AMR][1000 genomes]
rs11236978	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11236995	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11236998	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11237001	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11237005	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11237012	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11237046	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12363052	0.82[EUR][1000 genomes]
rs12364910	0.82[EUR][1000 genomes]
rs12785994	0.88[CEU][hapmap]
rs12791896	0.88[AMR][1000 genomes]
rs12791998	1.00[CEU][hapmap]
rs12792209	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12792893	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12793219	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12795242	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12797385	0.89[EUR][1000 genomes]
rs12797610	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs12806029	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12807361	0.80[EUR][1000 genomes]
rs12807766	0.82[EUR][1000 genomes]
rs34683571	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67397059	0.82[EUR][1000 genomes]
rs7944465	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:76613600-76631200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:76615600-76631200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:76617800-76630000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:76617800-76630000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:76618200-76637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:76618600-76629800	Weak transcription	A549	lung
8	chr11:76618600-76630000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:76622600-76630000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:76622600-76631200	Weak transcription	Spleen	Spleen
11	chr11:76622800-76627400	Weak transcription	K562	blood
12	chr11:76622800-76629600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:76622800-76631200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:76623000-76630000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:76623400-76629200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:76624200-76629000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:76625400-76627800	Weak transcription	Stomach Mucosa	stomach
18	chr11:76626400-76626600	Enhancers	Esophagus	oesophagus
19	chr11:76626400-76626800	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr11:76626400-76627000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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